Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC16.03■□□□□ 0.16
SHMT2P34897 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SHMT2P34897 HHIPL1-201ENST00000330710 7390 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHMT2P34897 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 GGT4P-201ENST00000623672 1708 ntBASIC16.02■□□□□ 0.16
SHMT2P34897 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHMT2P34897 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC16.02■□□□□ 0.16
SHMT2P34897 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.02■□□□□ 0.16
SHMT2P34897 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.02■□□□□ 0.16
SHMT2P34897 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SHMT2P34897 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHMT2P34897 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SHMT2P34897 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 SPCS2P4-201ENST00000436160 681 ntBASIC16.02■□□□□ 0.16
SHMT2P34897 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.02■□□□□ 0.16
SHMT2P34897 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC16.02■□□□□ 0.16
SHMT2P34897 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC16.02■□□□□ 0.16
SHMT2P34897 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SHMT2P34897 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.02■□□□□ 0.16
SHMT2P34897 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC16.02■□□□□ 0.16
SHMT2P34897 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.02■□□□□ 0.16
SHMT2P34897 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
SHMT2P34897 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHMT2P34897 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SHMT2P34897 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
SHMT2P34897 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHMT2P34897 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.02■□□□□ 0.15
SHMT2P34897 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SHMT2P34897 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SHMT2P34897 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 GP5-201ENST00000401815 3534 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SHMT2P34897 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC16.01■□□□□ 0.15
SHMT2P34897 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.01■□□□□ 0.15
SHMT2P34897 AC005237.2-201ENST00000434368 219 ntBASIC16.01■□□□□ 0.15
SHMT2P34897 LINC02055-207ENST00000524346 706 ntTSL 3 BASIC16.01■□□□□ 0.15
SHMT2P34897 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC16.01■□□□□ 0.15
SHMT2P34897 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 METTL23-205ENST00000588302 925 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 AC027307.2-201ENST00000591252 911 ntBASIC16.01■□□□□ 0.15
SHMT2P34897 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.01■□□□□ 0.15
SHMT2P34897 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.01■□□□□ 0.15
SHMT2P34897 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
SHMT2P34897 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SHMT2P34897 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC16.01■□□□□ 0.15
SHMT2P34897 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16■□□□□ 0.15
SHMT2P34897 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 NARF-206ENST00000457415 1668 ntTSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
SHMT2P34897 PRYP6-201ENST00000514804 343 ntBASIC16■□□□□ 0.15
SHMT2P34897 AC105233.2-201ENST00000523697 349 ntBASIC16■□□□□ 0.15
SHMT2P34897 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
SHMT2P34897 AF228730.5-201ENST00000530288 346 ntBASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 69.1 ms