Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.27■□□□□ 0.2
MSH3P20585 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MSH3P20585 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
MSH3P20585 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC16.27■□□□□ 0.2
MSH3P20585 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 MTHFR-217ENST00000641820 1569 ntBASIC16.27■□□□□ 0.2
MSH3P20585 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
MSH3P20585 CCDC127-201ENST00000296824 9342 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 STOM-202ENST00000347359 870 ntTSL 2 BASIC16.27■□□□□ 0.2
MSH3P20585 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC16.27■□□□□ 0.2
MSH3P20585 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 AC254562.1-201ENST00000417586 456 ntBASIC16.27■□□□□ 0.2
MSH3P20585 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
MSH3P20585 RPS8P6-201ENST00000426177 609 ntBASIC16.27■□□□□ 0.2
MSH3P20585 AC005237.2-201ENST00000434368 219 ntBASIC16.27■□□□□ 0.2
MSH3P20585 SPCS2P4-201ENST00000436160 681 ntBASIC16.27■□□□□ 0.2
MSH3P20585 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC16.27■□□□□ 0.2
MSH3P20585 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC16.27■□□□□ 0.2
MSH3P20585 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
MSH3P20585 INO80E-210ENST00000567705 880 ntTSL 3 BASIC16.27■□□□□ 0.2
MSH3P20585 AL138918.1-201ENST00000568306 659 ntBASIC16.27■□□□□ 0.2
MSH3P20585 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.27■□□□□ 0.2
MSH3P20585 AC022145.2-201ENST00000598203 171 ntBASIC16.27■□□□□ 0.2
MSH3P20585 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC16.27■□□□□ 0.2
MSH3P20585 AL596442.2-201ENST00000610240 980 ntBASIC16.27■□□□□ 0.2
MSH3P20585 AL513210.1-201ENST00000629608 234 ntBASIC16.27■□□□□ 0.2
MSH3P20585 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16.27■□□□□ 0.2
MSH3P20585 UXT-AS1-201ENST00000590504 1525 ntBASIC16.27■□□□□ 0.2
MSH3P20585 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
MSH3P20585 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.27■□□□□ 0.2
MSH3P20585 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
MSH3P20585 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
MSH3P20585 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.27■□□□□ 0.19
MSH3P20585 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
MSH3P20585 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 AC005622.1-201ENST00000636801 1703 ntBASIC16.27■□□□□ 0.19
MSH3P20585 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
MSH3P20585 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
MSH3P20585 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.27■□□□□ 0.19
MSH3P20585 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC16.27■□□□□ 0.19
MSH3P20585 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.27■□□□□ 0.19
MSH3P20585 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.19
MSH3P20585 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.27■□□□□ 0.19
MSH3P20585 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
MSH3P20585 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
MSH3P20585 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 LRP10-201ENST00000359591 6886 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 AP006288.1-201ENST00000446065 395 ntBASIC16.26■□□□□ 0.19
MSH3P20585 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 AC105233.2-201ENST00000523697 349 ntBASIC16.26■□□□□ 0.19
MSH3P20585 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 AF228730.5-201ENST00000530288 346 ntBASIC16.26■□□□□ 0.19
MSH3P20585 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 KRT8P23-201ENST00000560090 1207 ntBASIC16.26■□□□□ 0.19
MSH3P20585 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
MSH3P20585 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.26■□□□□ 0.19
MSH3P20585 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.26■□□□□ 0.19
MSH3P20585 AC004835.2-201ENST00000603762 682 ntBASIC16.26■□□□□ 0.19
MSH3P20585 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.26■□□□□ 0.19
MSH3P20585 AC139530.3-201ENST00000620344 690 ntBASIC16.26■□□□□ 0.19
MSH3P20585 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 93.6 ms