Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 SLC41A3-211ENST00000508835 1480 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 AC053503.3-201ENST00000448375 114 ntBASIC16.61■□□□□ 0.25
COL6A3P12111 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A3P12111 CHTF8-207ENST00000520529 475 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 RPL19-207ENST00000582193 792 ntAPPRIS ALT1 TSL 5 BASIC16.61■□□□□ 0.25
COL6A3P12111 POLR2E-204ENST00000586746 1096 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
COL6A3P12111 HKR1-225ENST00000592168 566 ntTSL 4 BASIC16.61■□□□□ 0.25
COL6A3P12111 SIGLEC29P-201ENST00000599873 1114 ntBASIC16.61■□□□□ 0.25
COL6A3P12111 AC007663.3-201ENST00000609632 465 ntBASIC16.61■□□□□ 0.25
COL6A3P12111 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 AC004899.1-201ENST00000424687 1714 ntBASIC16.61■□□□□ 0.25
COL6A3P12111 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 CHRNA1-203ENST00000409219 1466 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A3P12111 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL6A3P12111 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A3P12111 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
COL6A3P12111 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
COL6A3P12111 AC007787.1-201ENST00000588095 1583 ntBASIC16.61■□□□□ 0.25
COL6A3P12111 UROS-201ENST00000368774 744 ntTSL 2 BASIC16.61■□□□□ 0.25
COL6A3P12111 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.61■□□□□ 0.25
COL6A3P12111 POU5F1P6-201ENST00000466990 990 ntBASIC16.61■□□□□ 0.25
COL6A3P12111 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A3P12111 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A3P12111 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A3P12111 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
COL6A3P12111 CRCP-204ENST00000398684 492 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A3P12111 AL354892.2-201ENST00000413088 403 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A3P12111 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A3P12111 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A3P12111 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.6■□□□□ 0.25
COL6A3P12111 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.6■□□□□ 0.25
COL6A3P12111 AF111169.2-201ENST00000553758 721 ntTSL 3 BASIC16.6■□□□□ 0.25
COL6A3P12111 ANKRD11-208ENST00000563291 593 ntTSL 5 BASIC16.6■□□□□ 0.25
COL6A3P12111 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 AC007881.3-201ENST00000608897 607 ntBASIC16.6■□□□□ 0.25
COL6A3P12111 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 FETUB-207ENST00000450521 1410 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
COL6A3P12111 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
COL6A3P12111 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 TEX30-203ENST00000376022 828 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 AL008707.1-201ENST00000422498 534 ntBASIC16.59■□□□□ 0.25
COL6A3P12111 ANAPC13-205ENST00000511751 896 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
COL6A3P12111 SIRT3-210ENST00000529382 1225 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 FOS-204ENST00000554617 796 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 AC009950.1-210ENST00000594622 553 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A3P12111 DIO1-215ENST00000610607 796 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 PBK-201ENST00000301905 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 ACKR1-201ENST00000368121 1240 ntBASIC16.59■□□□□ 0.25
COL6A3P12111 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 AC006335.1-201ENST00000445200 547 ntBASIC16.59■□□□□ 0.25
COL6A3P12111 ZBTB45P2-201ENST00000452245 1531 ntBASIC16.59■□□□□ 0.25
COL6A3P12111 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 HIST1H3C-201ENST00000612966 411 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
COL6A3P12111 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
COL6A3P12111 HDAC2-AS2-203ENST00000436876 591 ntTSL 5 BASIC16.59■□□□□ 0.25
COL6A3P12111 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
COL6A3P12111 AC051619.9-201ENST00000623237 597 ntBASIC16.59■□□□□ 0.25
COL6A3P12111 AC104333.4-201ENST00000632866 554 ntTSL 3 BASIC16.59■□□□□ 0.25
COL6A3P12111 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A3P12111 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
COL6A3P12111 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC16.58■□□□□ 0.25
COL6A3P12111 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A3P12111 REEP5-205ENST00000504247 480 ntTSL 5 BASIC16.58■□□□□ 0.24
COL6A3P12111 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms