Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.07■□□□□ 0.48
TPM1P09493 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TPM1P09493 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
TPM1P09493 MIR648-201ENST00000385046 94 ntBASIC18.07■□□□□ 0.48
TPM1P09493 CDK2AP2P3-201ENST00000422476 372 ntBASIC18.07■□□□□ 0.48
TPM1P09493 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TPM1P09493 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.07■□□□□ 0.48
TPM1P09493 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.07■□□□□ 0.48
TPM1P09493 CYP2A7P1-201ENST00000595391 815 ntBASIC18.07■□□□□ 0.48
TPM1P09493 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.07■□□□□ 0.48
TPM1P09493 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
TPM1P09493 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TPM1P09493 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
TPM1P09493 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
TPM1P09493 EHHADH-203ENST00000456310 2577 ntTSL 2 BASIC18.07■□□□□ 0.48
TPM1P09493 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC18.07■□□□□ 0.48
TPM1P09493 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TPM1P09493 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
TPM1P09493 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
TPM1P09493 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
TPM1P09493 AL353732.1-201ENST00000569618 1459 ntBASIC18.07■□□□□ 0.48
TPM1P09493 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
TPM1P09493 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TPM1P09493 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC18.06■□□□□ 0.48
TPM1P09493 PSMD9-201ENST00000261817 2307 ntAPPRIS ALT1 TSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
TPM1P09493 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 FYTTD1-201ENST00000241502 6866 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC18.06■□□□□ 0.48
TPM1P09493 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 SLC35E2B-203ENST00000611123 5948 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC18.06■□□□□ 0.48
TPM1P09493 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.06■□□□□ 0.48
TPM1P09493 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 STARD13-205ENST00000439831 945 ntTSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 AC139887.3-201ENST00000568585 713 ntBASIC18.06■□□□□ 0.48
TPM1P09493 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 AP001269.4-201ENST00000609611 512 ntBASIC18.06■□□□□ 0.48
TPM1P09493 REXO1L3P-201ENST00000622202 1288 ntBASIC18.06■□□□□ 0.48
TPM1P09493 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC18.06■□□□□ 0.48
TPM1P09493 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC18.06■□□□□ 0.48
TPM1P09493 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.06■□□□□ 0.48
TPM1P09493 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC18.06■□□□□ 0.48
TPM1P09493 PI4KAP1-204ENST00000612579 1703 ntBASIC18.06■□□□□ 0.48
TPM1P09493 SLC2A13-201ENST00000280871 7003 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
TPM1P09493 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 ENDOD1-201ENST00000278505 4687 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 GLI2-210ENST00000452319 6799 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 CDKN1C-201ENST00000380725 1220 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC18.05■□□□□ 0.48
TPM1P09493 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.05■□□□□ 0.48
TPM1P09493 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC18.05■□□□□ 0.48
TPM1P09493 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
TPM1P09493 FICD-205ENST00000552758 603 ntTSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 AC087641.1-201ENST00000557561 1021 ntBASIC18.05■□□□□ 0.48
TPM1P09493 AL049597.2-201ENST00000565575 961 ntBASIC18.05■□□□□ 0.48
TPM1P09493 AC010654.1-201ENST00000615722 808 ntBASIC18.05■□□□□ 0.48
TPM1P09493 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 PRAL-201ENST00000624952 3286 ntBASIC18.05■□□□□ 0.48
TPM1P09493 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC18.05■□□□□ 0.48
TPM1P09493 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
TPM1P09493 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
TPM1P09493 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 54.6 ms