Protein–RNA interactions for Protein: O15178

T, Brachyury protein, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TO15178 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
TO15178 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
TO15178 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ 0
TO15178 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC15.05■□□□□ 0
TO15178 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.05■□□□□ -0
TO15178 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC15.05■□□□□ -0
TO15178 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
TO15178 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.05■□□□□ -0
TO15178 LINC01264-201ENST00000431395 500 ntTSL 3 BASIC15.05■□□□□ -0
TO15178 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC15.05■□□□□ -0
TO15178 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.05■□□□□ -0
TO15178 SMIM15-AS1-201ENST00000506902 796 ntTSL 3 BASIC15.05■□□□□ -0
TO15178 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.05■□□□□ -0
TO15178 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
TO15178 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC15.05■□□□□ -0
TO15178 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.05■□□□□ -0
TO15178 MIR4321-201ENST00000592276 80 ntBASIC15.05■□□□□ -0
TO15178 AC027612.4-201ENST00000605371 583 ntBASIC15.05■□□□□ -0
TO15178 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC15.05■□□□□ -0
TO15178 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC15.05■□□□□ -0
TO15178 GOLGA6L17P-202ENST00000614358 1398 ntBASIC15.05■□□□□ -0
TO15178 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.05■□□□□ -0
TO15178 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.05■□□□□ -0
TO15178 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC15.05■□□□□ -0
TO15178 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
TO15178 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC15.05■□□□□ -0
TO15178 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.05■□□□□ -0
TO15178 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC15.05■□□□□ -0
TO15178 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.05■□□□□ -0
TO15178 GCK-209ENST00000616242 2260 ntTSL 5 BASIC15.05■□□□□ -0
TO15178 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC15.05■□□□□ -0
TO15178 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ -0
TO15178 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.05■□□□□ -0
TO15178 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
TO15178 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 ITPKB-201ENST00000272117 5822 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
TO15178 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.04■□□□□ -0
TO15178 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 AP3S2-216ENST00000617003 1561 ntBASIC15.04■□□□□ -0
TO15178 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
TO15178 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC15.04■□□□□ -0
TO15178 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 RPS8P6-201ENST00000426177 609 ntBASIC15.04■□□□□ -0
TO15178 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.04■□□□□ -0
TO15178 URGCP-206ENST00000446958 365 ntTSL 2 BASIC15.04■□□□□ -0
TO15178 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC15.04■□□□□ -0
TO15178 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.04■□□□□ -0
TO15178 ALG1L8P-201ENST00000533887 760 ntBASIC15.04■□□□□ -0
TO15178 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC15.04■□□□□ -0
TO15178 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.04■□□□□ -0
TO15178 RARRES2P9-201ENST00000565168 469 ntBASIC15.04■□□□□ -0
TO15178 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC15.04■□□□□ -0
TO15178 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC15.04■□□□□ -0
TO15178 AC061975.2-201ENST00000581722 295 ntBASIC15.04■□□□□ -0
TO15178 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC15.04■□□□□ -0
TO15178 GPALPP1-207ENST00000611650 899 ntBASIC15.04■□□□□ -0
TO15178 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC15.04■□□□□ -0
TO15178 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC15.04■□□□□ -0
TO15178 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.04■□□□□ -0
TO15178 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
TO15178 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC15.04■□□□□ -0
TO15178 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC15.04■□□□□ -0
TO15178 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TO15178 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
TO15178 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
TO15178 TRAPPC8-210ENST00000582513 3205 ntTSL 1 (best) BASIC15.04■□□□□ -0
TO15178 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC15.03■□□□□ -0
TO15178 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC15.03■□□□□ -0
TO15178 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 67.9 ms