Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
VPS9D1Q9Y2B5 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 PCDH8P1-201ENST00000428983 2773 ntBASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AL355478.1-201ENST00000431686 821 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AL354994.1-201ENST00000445967 194 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AC016027.1-202ENST00000607927 1699 ntBASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
VPS9D1Q9Y2B5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 FRGCA-201ENST00000424933 422 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 RN7SL121P-201ENST00000584223 273 ntBASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 AC140113.2-201ENST00000604370 208 ntBASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 AC018695.7-201ENST00000624587 2492 ntBASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
VPS9D1Q9Y2B5 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms