Protein–RNA interactions for Protein: Q9P1Q0

VPS54, Vacuolar protein sorting-associated protein 54, humanhuman

Predictions only

Length 977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54Q9P1Q0 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DNAJB3-202ENST00000449667 1266 ntBASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 KRT8P23-201ENST00000560090 1207 ntBASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 AL691403.2-201ENST00000618460 490 ntBASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 INA-201ENST00000369849 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VPS54Q9P1Q0 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC069281.2-201ENST00000485071 4401 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 LRRC20-206ENST00000395011 2903 ntTSL 4 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC098859.1-201ENST00000502915 1238 ntBASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 CIRBP-204ENST00000585630 870 ntAPPRIS P3 TSL 3 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC004835.2-201ENST00000603762 682 ntBASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC084121.4-201ENST00000641598 221 ntBASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AF228730.8-201ENST00000642140 221 ntBASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ACE-204ENST00000428043 5120 ntTSL 2 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 AC008741.2-201ENST00000612792 3115 ntBASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
VPS54Q9P1Q0 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 AC254562.1-201ENST00000417586 456 ntBASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 KRT18P32-201ENST00000424695 1287 ntBASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 CNN2P11-201ENST00000429351 262 ntBASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 AC103736.1-203ENST00000524565 872 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 AC027612.4-201ENST00000605371 583 ntBASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 AC139530.3-201ENST00000620344 690 ntBASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
VPS54Q9P1Q0 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms