Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 FNTAP2-201ENST00000430308 634 ntBASIC17.59■□□□□ 0.41
LRCH3Q96II8 AC114501.1-201ENST00000445949 172 ntBASIC17.59■□□□□ 0.41
LRCH3Q96II8 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 RHOA-206ENST00000454011 889 ntTSL 2 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC17.59■□□□□ 0.41
LRCH3Q96II8 AC006213.4-201ENST00000616184 634 ntBASIC17.59■□□□□ 0.41
LRCH3Q96II8 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
LRCH3Q96II8 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRCH3Q96II8 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRCH3Q96II8 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC17.58■□□□□ 0.41
LRCH3Q96II8 ZBTB4-201ENST00000311403 5956 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRCH3Q96II8 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRCH3Q96II8 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.58■□□□□ 0.41
LRCH3Q96II8 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
LRCH3Q96II8 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRCH3Q96II8 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC17.58■□□□□ 0.41
LRCH3Q96II8 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
LRCH3Q96II8 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.58■□□□□ 0.4
LRCH3Q96II8 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 RN7SL769P-201ENST00000469386 295 ntBASIC17.58■□□□□ 0.4
LRCH3Q96II8 AC073573.1-201ENST00000550908 481 ntTSL 3 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 CHMP4BP1-201ENST00000556017 588 ntBASIC17.58■□□□□ 0.4
LRCH3Q96II8 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 AC105105.3-201ENST00000585470 646 ntTSL 5 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 PRKN-211ENST00000615065 261 ntTSL 5 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 ANXA2R-202ENST00000616064 1265 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
LRCH3Q96II8 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
LRCH3Q96II8 AC108860.2-201ENST00000562760 2183 ntBASIC17.57■□□□□ 0.4
LRCH3Q96II8 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 STK4-201ENST00000372801 2038 ntTSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 PSMD8-209ENST00000602911 1330 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 FTH1P14-201ENST00000482930 551 ntBASIC17.57■□□□□ 0.4
LRCH3Q96II8 HIST2H2BC-201ENST00000498492 580 ntBASIC17.57■□□□□ 0.4
LRCH3Q96II8 AC120498.1-201ENST00000563593 476 ntTSL 4 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 DUX4L45-201ENST00000566406 1057 ntBASIC17.57■□□□□ 0.4
LRCH3Q96II8 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC17.57■□□□□ 0.4
LRCH3Q96II8 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
LRCH3Q96II8 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.57■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms