Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGB4Q8WW32 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 MXI1-205ENST00000393134 889 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 SPDYE17-201ENST00000412399 783 ntBASIC16.32■□□□□ 0.2
HMGB4Q8WW32 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 MYCLP2-201ENST00000449268 967 ntBASIC16.32■□□□□ 0.2
HMGB4Q8WW32 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGB4Q8WW32 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 ALDH3A1-205ENST00000444455 1771 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 GGT4P-201ENST00000623672 1708 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 MIB2-201ENST00000355826 3290 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 AL589987.1-201ENST00000453380 819 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 AC023310.3-201ENST00000557027 670 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 AC100756.1-201ENST00000562736 682 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 AC138749.3-201ENST00000567691 622 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 AC116165.1-201ENST00000611806 668 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.31■□□□□ 0.2
HMGB4Q8WW32 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 STRN4-201ENST00000263280 3210 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGB4Q8WW32 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms