Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 AC061975.2-201ENST00000581722 295 ntBASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 IFT20-216ENST00000588477 774 ntTSL 5 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 GSTO2-203ENST00000450629 1391 ntTSL 5 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 AC005622.1-201ENST00000636801 1703 ntBASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.36■□□□□ 0.21
HDDC3Q8N4P3 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AC138969.3-201ENST00000546612 1459 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AC138932.2-201ENST00000548268 1459 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AC126755.4-201ENST00000549796 1459 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AC007541.1-201ENST00000570282 1469 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AL353779.1-201ENST00000434793 351 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AC140912.1-201ENST00000577171 1054 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AL132655.2-201ENST00000596276 594 ntBASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 EIF4G3-212ENST00000602326 6196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
HDDC3Q8N4P3 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 TCEA1-201ENST00000396401 2718 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 LINC01144-201ENST00000626198 1710 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 C2orf40-201ENST00000238044 789 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 CENPM-206ENST00000407253 818 ntTSL 2 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 U91328.1-201ENST00000437528 223 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC009477.1-201ENST00000452936 217 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC026979.3-201ENST00000607315 403 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC017083.2-201ENST00000608069 979 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 MIR6799-201ENST00000620297 69 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 AC078925.2-201ENST00000624013 1973 ntBASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 IL25-201ENST00000329715 1315 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
HDDC3Q8N4P3 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC16.34■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms