Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 RGL3-201ENST00000380456 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 AC020658.6-201ENST00000623564 1870 ntBASIC18.63■□□□□ 0.57
ATL3Q6DD88 GINS2-201ENST00000253462 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 NMU-203ENST00000507338 658 ntTSL 3 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 AC079776.4-201ENST00000511039 504 ntBASIC18.63■□□□□ 0.57
ATL3Q6DD88 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 RN7SL510P-201ENST00000581311 263 ntBASIC18.63■□□□□ 0.57
ATL3Q6DD88 AL049840.3-201ENST00000602669 611 ntBASIC18.63■□□□□ 0.57
ATL3Q6DD88 AL031008.1-201ENST00000619963 541 ntBASIC18.63■□□□□ 0.57
ATL3Q6DD88 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC18.63■□□□□ 0.57
ATL3Q6DD88 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
ATL3Q6DD88 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 RNA5SP419-201ENST00000515908 135 ntBASIC18.62■□□□□ 0.57
ATL3Q6DD88 RNA5SP415-201ENST00000517246 115 ntBASIC18.62■□□□□ 0.57
ATL3Q6DD88 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 CD63-204ENST00000546939 779 ntTSL 3 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 AC103702.1-201ENST00000548801 2630 ntBASIC18.62■□□□□ 0.57
ATL3Q6DD88 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
ATL3Q6DD88 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
ATL3Q6DD88 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 LITAF-211ENST00000572255 516 ntTSL 4 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 CD7-202ENST00000578509 925 ntTSL 3 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 AL596257.1-201ENST00000641463 2694 ntBASIC18.61■□□□□ 0.57
ATL3Q6DD88 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC18.61■□□□□ 0.57
ATL3Q6DD88 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
ATL3Q6DD88 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC18.61■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms