Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.69■□□□□ 0.74
CCDC88AQ3V6T2 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 FAM172A-204ENST00000505869 1387 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 CSHL1-203ENST00000346606 659 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 RNF216P1-203ENST00000404404 2427 ntBASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC88AQ3V6T2 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 SUOX-214ENST00000551841 906 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 RELA-227ENST00000615805 2236 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 HMBS-216ENST00000543090 1347 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 ZBTB12BP-201ENST00000314232 1122 ntBASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 MIR326-201ENST00000362220 95 ntBASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 AC106760.1-201ENST00000508690 800 ntBASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
CCDC88AQ3V6T2 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 INTS4P2-202ENST00000614726 2019 ntBASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 HIST3H2BA-201ENST00000436555 524 ntBASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
CCDC88AQ3V6T2 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PQBP1-201ENST00000218224 1113 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 PQBP1-202ENST00000247140 664 ntTSL 3 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC88AQ3V6T2 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms