Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 IGHV3OR16-6-201ENST00000568775 360 ntBASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 AC005622.1-201ENST00000636801 1703 ntBASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 STOM-202ENST00000347359 870 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AC002056.1-201ENST00000395613 760 ntBASIC16■□□□□ 0.15
PTCHD3Q3KNS1 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AP000344.2-201ENST00000512987 629 ntBASIC16■□□□□ 0.15
PTCHD3Q3KNS1 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 OR10S1-201ENST00000531945 1121 ntAPPRIS P2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AL355385.1-201ENST00000606123 409 ntBASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AL513210.1-201ENST00000629608 234 ntBASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 OR10S1-202ENST00000641123 1121 ntAPPRIS ALT2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 LINC02199-201ENST00000506655 2702 ntBASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PTCHD3Q3KNS1 AC008741.2-201ENST00000612792 3115 ntBASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 AC004461.1-201ENST00000412461 403 ntBASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 TIMM8BP1-201ENST00000452384 211 ntBASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 AC105339.1-204ENST00000636249 355 ntBASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PTCHD3Q3KNS1 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.99■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms