Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 UBALD1-205ENST00000590891 2641 ntBASIC14.04□□□□□ -0.16
ABCA4P78363 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 NOV-201ENST00000259526 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ABCA4P78363 KRTAP10-1-201ENST00000400375 1215 ntAPPRIS P1 BASIC14.03□□□□□ -0.16
ABCA4P78363 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC14.03□□□□□ -0.16
ABCA4P78363 AC004945.1-201ENST00000416738 983 ntBASIC14.03□□□□□ -0.16
ABCA4P78363 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC14.03□□□□□ -0.16
ABCA4P78363 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC14.03□□□□□ -0.16
ABCA4P78363 APOC4-201ENST00000591600 348 ntTSL 3 BASIC14.03□□□□□ -0.16
ABCA4P78363 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.03□□□□□ -0.16
ABCA4P78363 AC099568.2-201ENST00000609194 695 ntBASIC14.03□□□□□ -0.16
ABCA4P78363 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.03□□□□□ -0.16
ABCA4P78363 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC14.03□□□□□ -0.16
ABCA4P78363 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 PHF1-201ENST00000374512 2224 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 AMT-206ENST00000458307 1860 ntTSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 MXI1-205ENST00000393134 889 ntTSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 CC2D2B-203ENST00000423344 1241 ntTSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 AL356489.1-201ENST00000449144 1144 ntTSL 3 BASIC14.03□□□□□ -0.16
ABCA4P78363 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC14.03□□□□□ -0.16
ABCA4P78363 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 RN7SL828P-201ENST00000607615 303 ntBASIC14.03□□□□□ -0.16
ABCA4P78363 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC14.03□□□□□ -0.16
ABCA4P78363 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC14.03□□□□□ -0.16
ABCA4P78363 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC14.03□□□□□ -0.16
ABCA4P78363 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
ABCA4P78363 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC14.02□□□□□ -0.16
ABCA4P78363 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 ADORA2A-213ENST00000610595 2736 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.16
ABCA4P78363 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC14.02□□□□□ -0.16
ABCA4P78363 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 FAM86MP-201ENST00000340703 885 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC14.02□□□□□ -0.16
ABCA4P78363 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.02□□□□□ -0.16
ABCA4P78363 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC14.02□□□□□ -0.16
ABCA4P78363 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.02□□□□□ -0.16
ABCA4P78363 RPL28-204ENST00000431533 590 ntTSL 2 BASIC14.02□□□□□ -0.16
ABCA4P78363 AC055876.2-201ENST00000531834 546 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 SNX29P1-201ENST00000548357 1007 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 RPL28-206ENST00000558752 671 ntTSL 3 BASIC14.02□□□□□ -0.16
ABCA4P78363 AC061975.2-201ENST00000581722 295 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC14.02□□□□□ -0.16
ABCA4P78363 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC14.02□□□□□ -0.16
ABCA4P78363 SRD5A3P1-201ENST00000603021 949 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 AC084346.2-201ENST00000607097 949 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC14.02□□□□□ -0.16
ABCA4P78363 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.02□□□□□ -0.16
ABCA4P78363 GGT4P-201ENST00000623672 1708 ntBASIC14.02□□□□□ -0.16
ABCA4P78363 ZNF451-203ENST00000370706 5268 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
ABCA4P78363 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
ABCA4P78363 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms