Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.94■□□□□ 0.14
YBX1P67809 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.94■□□□□ 0.14
YBX1P67809 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC15.94■□□□□ 0.14
YBX1P67809 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC15.94■□□□□ 0.14
YBX1P67809 WASH6P-202ENST00000359512 1437 ntBASIC15.94■□□□□ 0.14
YBX1P67809 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.93■□□□□ 0.14
YBX1P67809 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.93■□□□□ 0.14
YBX1P67809 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
YBX1P67809 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC15.93■□□□□ 0.14
YBX1P67809 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC15.93■□□□□ 0.14
YBX1P67809 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 MIR1233-2-201ENST00000408138 82 ntBASIC15.93■□□□□ 0.14
YBX1P67809 MIR1233-1-201ENST00000408722 82 ntBASIC15.93■□□□□ 0.14
YBX1P67809 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.93■□□□□ 0.14
YBX1P67809 AC211486.1-202ENST00000416371 468 ntBASIC15.93■□□□□ 0.14
YBX1P67809 TIMM8BP1-201ENST00000452384 211 ntBASIC15.93■□□□□ 0.14
YBX1P67809 AC211476.1-201ENST00000503899 468 ntBASIC15.93■□□□□ 0.14
YBX1P67809 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC15.93■□□□□ 0.14
YBX1P67809 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC15.93■□□□□ 0.14
YBX1P67809 SLC1A4-201ENST00000234256 4561 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 VAV3-210ENST00000527011 4510 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.93■□□□□ 0.14
YBX1P67809 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC15.93■□□□□ 0.14
YBX1P67809 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC15.93■□□□□ 0.14
YBX1P67809 PCGF3-213ENST00000620529 1899 ntBASIC15.93■□□□□ 0.14
YBX1P67809 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.93■□□□□ 0.14
YBX1P67809 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC15.93■□□□□ 0.14
YBX1P67809 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 GABRB3-202ENST00000311550 5781 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 AC079140.1-201ENST00000508039 487 ntBASIC15.92■□□□□ 0.14
YBX1P67809 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.92■□□□□ 0.14
YBX1P67809 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.92■□□□□ 0.14
YBX1P67809 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 RPS15-207ENST00000591032 550 ntTSL 3 BASIC15.92■□□□□ 0.14
YBX1P67809 RPS15-212ENST00000593052 629 ntTSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.92■□□□□ 0.14
YBX1P67809 AC026120.1-201ENST00000611536 926 ntBASIC15.92■□□□□ 0.14
YBX1P67809 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 AL161645.1-201ENST00000622716 1255 ntBASIC15.92■□□□□ 0.14
YBX1P67809 AC105339.1-204ENST00000636249 355 ntBASIC15.92■□□□□ 0.14
YBX1P67809 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.92■□□□□ 0.14
YBX1P67809 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.92■□□□□ 0.14
YBX1P67809 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC15.92■□□□□ 0.14
YBX1P67809 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.92■□□□□ 0.14
YBX1P67809 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
YBX1P67809 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC15.91■□□□□ 0.14
YBX1P67809 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
YBX1P67809 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.91■□□□□ 0.14
YBX1P67809 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
YBX1P67809 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
YBX1P67809 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
YBX1P67809 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
YBX1P67809 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
YBX1P67809 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
YBX1P67809 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.91■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms