Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.65■□□□□ 0.26
CDH4P55283 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CDH4P55283 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH4P55283 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CDH4P55283 MED17-201ENST00000251871 5142 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH4P55283 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC16.65■□□□□ 0.26
CDH4P55283 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC16.65■□□□□ 0.26
CDH4P55283 MIR943-201ENST00000401286 94 ntBASIC16.65■□□□□ 0.26
CDH4P55283 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.65■□□□□ 0.26
CDH4P55283 NDUFA4L2-202ENST00000554503 1177 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 AL158211.3-201ENST00000607385 239 ntBASIC16.65■□□□□ 0.26
CDH4P55283 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.65■□□□□ 0.26
CDH4P55283 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH4P55283 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC16.65■□□□□ 0.26
CDH4P55283 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.65■□□□□ 0.26
CDH4P55283 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 DCP1B-201ENST00000280665 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CDH4P55283 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.26
CDH4P55283 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
CDH4P55283 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC16.64■□□□□ 0.25
CDH4P55283 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH4P55283 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CDH4P55283 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.64■□□□□ 0.25
CDH4P55283 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 AL139010.1-201ENST00000454878 894 ntBASIC16.64■□□□□ 0.25
CDH4P55283 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.64■□□□□ 0.25
CDH4P55283 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH4P55283 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC16.64■□□□□ 0.25
CDH4P55283 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC16.64■□□□□ 0.25
CDH4P55283 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CDH4P55283 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.63■□□□□ 0.25
CDH4P55283 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH4P55283 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
CDH4P55283 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH4P55283 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CDH4P55283 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
CDH4P55283 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC16.63■□□□□ 0.25
CDH4P55283 TREML5P-201ENST00000421694 576 ntBASIC16.63■□□□□ 0.25
CDH4P55283 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 MTND6P24-201ENST00000440466 518 ntBASIC16.63■□□□□ 0.25
CDH4P55283 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CDH4P55283 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC16.63■□□□□ 0.25
CDH4P55283 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 AL355385.1-201ENST00000606123 409 ntBASIC16.63■□□□□ 0.25
CDH4P55283 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC16.63■□□□□ 0.25
CDH4P55283 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
CDH4P55283 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CDH4P55283 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.63■□□□□ 0.25
CDH4P55283 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
CDH4P55283 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 37.7 ms