Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 NOSIP-201ENST00000339093 1000 ntAPPRIS ALT1 TSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 GUK1-206ENST00000366723 845 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 PHKG1P2-201ENST00000457537 863 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC20.16■□□□□ 0.82
COL5A3P25940 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.16■□□□□ 0.82
COL5A3P25940 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL5A3P25940 MIR3615-201ENST00000581999 87 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 AC103810.3-201ENST00000583567 96 ntBASIC20.16■□□□□ 0.82
COL5A3P25940 PRKN-211ENST00000615065 261 ntTSL 5 BASIC20.16■□□□□ 0.82
COL5A3P25940 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A3P25940 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A3P25940 DRD5P1-201ENST00000456605 1438 ntBASIC20.15■□□□□ 0.82
COL5A3P25940 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC20.15■□□□□ 0.82
COL5A3P25940 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC20.15■□□□□ 0.82
COL5A3P25940 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC20.15■□□□□ 0.82
COL5A3P25940 RPL8-205ENST00000527914 551 ntTSL 3 BASIC20.15■□□□□ 0.82
COL5A3P25940 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC20.15■□□□□ 0.82
COL5A3P25940 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
COL5A3P25940 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A3P25940 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC20.15■□□□□ 0.82
COL5A3P25940 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
COL5A3P25940 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
COL5A3P25940 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
COL5A3P25940 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL5A3P25940 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL5A3P25940 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC20.14■□□□□ 0.82
COL5A3P25940 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC20.14■□□□□ 0.82
COL5A3P25940 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A3P25940 RNU1-114P-201ENST00000365297 166 ntBASIC20.14■□□□□ 0.81
COL5A3P25940 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC20.14■□□□□ 0.81
COL5A3P25940 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC20.14■□□□□ 0.81
COL5A3P25940 AL590640.2-201ENST00000457038 527 ntBASIC20.14■□□□□ 0.81
COL5A3P25940 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC20.14■□□□□ 0.81
COL5A3P25940 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC20.14■□□□□ 0.81
COL5A3P25940 ARL16-210ENST00000574938 751 ntTSL 2 BASIC20.14■□□□□ 0.81
COL5A3P25940 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
COL5A3P25940 LARP4-220ENST00000615080 856 ntTSL 5 BASIC20.14■□□□□ 0.81
COL5A3P25940 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
COL5A3P25940 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.14■□□□□ 0.81
COL5A3P25940 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A3P25940 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC20.14■□□□□ 0.81
COL5A3P25940 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A3P25940 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC20.14■□□□□ 0.81
COL5A3P25940 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.14■□□□□ 0.81
COL5A3P25940 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A3P25940 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A3P25940 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL5A3P25940 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 AL607033.1-201ENST00000623900 1599 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 AGER-203ENST00000375065 665 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
COL5A3P25940 IGHJ2P-201ENST00000454480 60 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 CCDC153-204ENST00000503566 1295 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
COL5A3P25940 AC006487.1-201ENST00000514506 1221 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 RHOQP1-201ENST00000555758 579 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A3P25940 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 UBALD1-205ENST00000590891 2641 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A3P25940 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 MIR326-201ENST00000362220 95 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.13■□□□□ 0.81
COL5A3P25940 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC20.13■□□□□ 0.81
COL5A3P25940 AC008687.7-202ENST00000637404 953 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
COL5A3P25940 CYP2AB1P-202ENST00000454440 1456 ntBASIC20.13■□□□□ 0.81
COL5A3P25940 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC20.13■□□□□ 0.81
COL5A3P25940 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.12■□□□□ 0.81
COL5A3P25940 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
COL5A3P25940 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms