Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 FAM8A3P-201ENST00000427218 844 ntBASIC17.19■□□□□ 0.34
BDNFP23560 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 INGX-202ENST00000489074 768 ntBASIC17.19■□□□□ 0.34
BDNFP23560 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC17.19■□□□□ 0.34
BDNFP23560 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC17.19■□□□□ 0.34
BDNFP23560 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC17.19■□□□□ 0.34
BDNFP23560 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.19■□□□□ 0.34
BDNFP23560 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.19■□□□□ 0.34
BDNFP23560 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 PCDHA14-201ENST00000506751 2298 ntBASIC17.19■□□□□ 0.34
BDNFP23560 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 KLF3-201ENST00000261438 5122 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC17.19■□□□□ 0.34
BDNFP23560 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.19■□□□□ 0.34
BDNFP23560 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.19■□□□□ 0.34
BDNFP23560 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC17.19■□□□□ 0.34
BDNFP23560 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.19■□□□□ 0.34
BDNFP23560 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC17.18■□□□□ 0.34
BDNFP23560 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.18■□□□□ 0.34
BDNFP23560 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
BDNFP23560 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.18■□□□□ 0.34
BDNFP23560 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC17.18■□□□□ 0.34
BDNFP23560 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.18■□□□□ 0.34
BDNFP23560 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.18■□□□□ 0.34
BDNFP23560 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.18■□□□□ 0.34
BDNFP23560 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
BDNFP23560 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.18■□□□□ 0.34
BDNFP23560 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC17.18■□□□□ 0.34
BDNFP23560 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC17.18■□□□□ 0.34
BDNFP23560 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.18■□□□□ 0.34
BDNFP23560 AC092364.2-202ENST00000597012 1073 ntBASIC17.18■□□□□ 0.34
BDNFP23560 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.18■□□□□ 0.34
BDNFP23560 AL589739.1-201ENST00000607720 493 ntBASIC17.18■□□□□ 0.34
BDNFP23560 AL133215.2-201ENST00000609242 977 ntBASIC17.18■□□□□ 0.34
BDNFP23560 GPER1-207ENST00000619052 571 ntTSL 2 BASIC17.18■□□□□ 0.34
BDNFP23560 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC17.18■□□□□ 0.34
BDNFP23560 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.18■□□□□ 0.34
BDNFP23560 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.18■□□□□ 0.34
BDNFP23560 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.18■□□□□ 0.34
BDNFP23560 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
BDNFP23560 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC17.17■□□□□ 0.34
BDNFP23560 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 AC241585.1-201ENST00000433527 519 ntBASIC17.17■□□□□ 0.34
BDNFP23560 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
BDNFP23560 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC17.17■□□□□ 0.34
BDNFP23560 AL512638.1-201ENST00000457493 794 ntBASIC17.17■□□□□ 0.34
BDNFP23560 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.17■□□□□ 0.34
BDNFP23560 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 REXO1L8P-201ENST00000604378 1897 ntBASIC17.17■□□□□ 0.34
BDNFP23560 AC100757.3-201ENST00000622361 1406 ntBASIC17.17■□□□□ 0.34
BDNFP23560 AL590560.3-201ENST00000623350 461 ntBASIC17.17■□□□□ 0.34
BDNFP23560 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.17■□□□□ 0.34
BDNFP23560 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
BDNFP23560 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
BDNFP23560 CES3-203ENST00000543856 3178 ntTSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.17■□□□□ 0.34
BDNFP23560 CETN4P-206ENST00000642099 2168 ntBASIC17.16■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 51.6 ms