Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL9A1P20849 AL512430.1-201ENST00000392575 860 ntBASIC16.67■□□□□ 0.26
COL9A1P20849 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC16.67■□□□□ 0.26
COL9A1P20849 PCOLCE2-208ENST00000485766 1088 ntTSL 5 BASIC16.67■□□□□ 0.26
COL9A1P20849 RN7SL720P-201ENST00000488178 304 ntBASIC16.67■□□□□ 0.26
COL9A1P20849 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.67■□□□□ 0.26
COL9A1P20849 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC16.67■□□□□ 0.26
COL9A1P20849 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.67■□□□□ 0.26
COL9A1P20849 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.67■□□□□ 0.26
COL9A1P20849 SUOX-214ENST00000551841 906 ntTSL 3 BASIC16.67■□□□□ 0.26
COL9A1P20849 BANF1P1-201ENST00000553684 263 ntBASIC16.67■□□□□ 0.26
COL9A1P20849 DUX4L45-201ENST00000566406 1057 ntBASIC16.67■□□□□ 0.26
COL9A1P20849 RRP7BP-205ENST00000566851 833 ntBASIC16.67■□□□□ 0.26
COL9A1P20849 AC105021.1-202ENST00000570572 669 ntBASIC16.67■□□□□ 0.26
COL9A1P20849 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC16.67■□□□□ 0.26
COL9A1P20849 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.67■□□□□ 0.26
COL9A1P20849 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.67■□□□□ 0.26
COL9A1P20849 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC16.67■□□□□ 0.26
COL9A1P20849 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
COL9A1P20849 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL9A1P20849 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC16.67■□□□□ 0.26
COL9A1P20849 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
COL9A1P20849 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
COL9A1P20849 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 FAM220BP-201ENST00000377689 816 ntBASIC16.66■□□□□ 0.26
COL9A1P20849 OR5D16-201ENST00000378396 987 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL9A1P20849 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 TSACC-208ENST00000481479 741 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC16.66■□□□□ 0.26
COL9A1P20849 AC025259.3-202ENST00000564363 687 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 MIR5189-201ENST00000577370 114 ntBASIC16.66■□□□□ 0.26
COL9A1P20849 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 AL133215.2-201ENST00000609242 977 ntBASIC16.66■□□□□ 0.26
COL9A1P20849 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL9A1P20849 AC091812.3-201ENST00000621362 345 ntBASIC16.66■□□□□ 0.26
COL9A1P20849 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC16.66■□□□□ 0.26
COL9A1P20849 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 PCDHB17P-201ENST00000539533 2393 ntBASIC16.66■□□□□ 0.26
COL9A1P20849 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 GOLGA2P9-201ENST00000596977 1937 ntBASIC16.66■□□□□ 0.26
COL9A1P20849 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL9A1P20849 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 LINC00470-210ENST00000584090 1334 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL9A1P20849 AC020922.1-201ENST00000591954 3058 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL9A1P20849 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 TRIP10-201ENST00000313244 2153 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 ABHD13-201ENST00000375898 5338 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 BRF1-202ENST00000379932 884 ntTSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 MPV17-206ENST00000402722 827 ntTSL 3 BASIC16.65■□□□□ 0.26
COL9A1P20849 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 AC069218.1-201ENST00000435269 762 ntBASIC16.65■□□□□ 0.26
COL9A1P20849 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL9A1P20849 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC16.65■□□□□ 0.26
COL9A1P20849 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 ABBA01031660.1-201ENST00000635219 756 ntBASIC16.65■□□□□ 0.26
COL9A1P20849 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.65■□□□□ 0.26
COL9A1P20849 AL133373.2-201ENST00000623187 2828 ntBASIC16.65■□□□□ 0.26
COL9A1P20849 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL9A1P20849 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms