Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 KLK4-202ENST00000431178 481 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A1P12109 RPL13P2-201ENST00000440687 659 ntBASIC17.85■□□□□ 0.45
COL6A1P12109 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A1P12109 GTF2H2C-215ENST00000514162 610 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 AC079316.1-201ENST00000548397 411 ntBASIC17.85■□□□□ 0.45
COL6A1P12109 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A1P12109 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 DUX4L45-201ENST00000566406 1057 ntBASIC17.85■□□□□ 0.45
COL6A1P12109 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A1P12109 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC17.85■□□□□ 0.45
COL6A1P12109 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC17.85■□□□□ 0.45
COL6A1P12109 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.85■□□□□ 0.45
COL6A1P12109 CR381653.1-201ENST00000622961 812 ntTSL 3 BASIC17.85■□□□□ 0.45
COL6A1P12109 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
COL6A1P12109 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 AC005332.8-201ENST00000622750 2735 ntBASIC17.84■□□□□ 0.45
COL6A1P12109 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 C3orf22-201ENST00000318225 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 AL845321.1-202ENST00000432011 786 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC17.84■□□□□ 0.45
COL6A1P12109 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC17.84■□□□□ 0.45
COL6A1P12109 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.84■□□□□ 0.45
COL6A1P12109 FTH1P14-201ENST00000482930 551 ntBASIC17.84■□□□□ 0.45
COL6A1P12109 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 AKIP1-210ENST00000534147 1022 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 RIT1-205ENST00000539040 919 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 COG4-212ENST00000564653 590 ntTSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 AC124283.3-201ENST00000570869 594 ntBASIC17.84■□□□□ 0.45
COL6A1P12109 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 LETM1P2-201ENST00000597330 2178 ntBASIC17.84■□□□□ 0.45
COL6A1P12109 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
COL6A1P12109 SLC38A6-202ENST00000354886 1730 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
COL6A1P12109 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC17.84■□□□□ 0.45
COL6A1P12109 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC17.84■□□□□ 0.45
COL6A1P12109 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A1P12109 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC17.83■□□□□ 0.45
COL6A1P12109 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC17.83■□□□□ 0.45
COL6A1P12109 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A1P12109 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.83■□□□□ 0.45
COL6A1P12109 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC17.83■□□□□ 0.45
COL6A1P12109 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A1P12109 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.45
COL6A1P12109 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
COL6A1P12109 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 ECSIT-209ENST00000591104 1319 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 FAM169B-201ENST00000332908 579 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A1P12109 AC026954.1-201ENST00000429771 1293 ntBASIC17.83■□□□□ 0.44
COL6A1P12109 AC139149.1-202ENST00000442532 783 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A1P12109 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
COL6A1P12109 FAM86LP-201ENST00000478302 853 ntBASIC17.83■□□□□ 0.44
COL6A1P12109 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A1P12109 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC17.83■□□□□ 0.44
COL6A1P12109 AC026495.1-203ENST00000557528 906 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.83■□□□□ 0.44
COL6A1P12109 RN7SL560P-201ENST00000577943 264 ntBASIC17.83■□□□□ 0.44
COL6A1P12109 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.83■□□□□ 0.44
COL6A1P12109 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 ZNF773-201ENST00000282292 2206 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
COL6A1P12109 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
COL6A1P12109 AC006538.1-201ENST00000567905 1585 ntBASIC17.83■□□□□ 0.44
COL6A1P12109 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.83■□□□□ 0.44
COL6A1P12109 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC17.83■□□□□ 0.44
COL6A1P12109 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
COL6A1P12109 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC17.82■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms