Protein–RNA interactions for Protein: P09630

HOXC6, Homeobox protein Hox-C6, humanhuman

Predictions only

Length 235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC6P09630 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 CROCCP4-201ENST00000457096 498 ntBASIC18.3■□□□□ 0.52
HOXC6P09630 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 RN7SL399P-201ENST00000471648 279 ntBASIC18.3■□□□□ 0.52
HOXC6P09630 AC104989.1-201ENST00000519711 778 ntBASIC18.3■□□□□ 0.52
HOXC6P09630 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.3■□□□□ 0.52
HOXC6P09630 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC18.3■□□□□ 0.52
HOXC6P09630 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC18.3■□□□□ 0.52
HOXC6P09630 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 LINC01205-202ENST00000497996 1493 ntTSL 2 BASIC18.3■□□□□ 0.52
HOXC6P09630 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 U82695.1-201ENST00000635752 1889 ntBASIC18.3■□□□□ 0.52
HOXC6P09630 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
HOXC6P09630 RNF167-214ENST00000576229 1436 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC18.3■□□□□ 0.52
HOXC6P09630 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
HOXC6P09630 REXO1L6P-201ENST00000603433 1515 ntBASIC18.29■□□□□ 0.52
HOXC6P09630 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 PACS1-203ENST00000524815 628 ntTSL 4 BASIC18.29■□□□□ 0.52
HOXC6P09630 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC6P09630 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC6P09630 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
HOXC6P09630 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.29■□□□□ 0.52
HOXC6P09630 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
HOXC6P09630 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC18.28■□□□□ 0.52
HOXC6P09630 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC6P09630 ADARB1-201ENST00000348831 6882 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
HOXC6P09630 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC6P09630 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC6P09630 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 KRT43P-201ENST00000434019 910 ntBASIC18.28■□□□□ 0.52
HOXC6P09630 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 AC008115.1-201ENST00000542291 150 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
HOXC6P09630 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC18.28■□□□□ 0.52
HOXC6P09630 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 AL606495.2-201ENST00000605867 535 ntBASIC18.28■□□□□ 0.52
HOXC6P09630 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
HOXC6P09630 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
HOXC6P09630 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms