Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 PTMS-202ENST00000389462 773 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
LDB3O75112 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.39■□□□□ 0.05
LDB3O75112 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 AC093520.2-201ENST00000561830 333 ntBASIC15.39■□□□□ 0.05
LDB3O75112 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC15.39■□□□□ 0.05
LDB3O75112 AC006449.6-201ENST00000612330 2296 ntBASIC15.39■□□□□ 0.05
LDB3O75112 BTBD1-201ENST00000261721 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC15.39■□□□□ 0.05
LDB3O75112 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC15.39■□□□□ 0.05
LDB3O75112 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
LDB3O75112 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC15.38■□□□□ 0.05
LDB3O75112 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 AL627223.1-201ENST00000416693 442 ntBASIC15.38■□□□□ 0.05
LDB3O75112 KRT18P32-201ENST00000424695 1287 ntBASIC15.38■□□□□ 0.05
LDB3O75112 AC142381.1-201ENST00000426099 345 ntBASIC15.38■□□□□ 0.05
LDB3O75112 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC15.38■□□□□ 0.05
LDB3O75112 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 SLC25A39P2-201ENST00000537614 270 ntBASIC15.38■□□□□ 0.05
LDB3O75112 KRT8P23-201ENST00000560090 1207 ntBASIC15.38■□□□□ 0.05
LDB3O75112 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC15.38■□□□□ 0.05
LDB3O75112 SSH2-211ENST00000590153 570 ntTSL 4 BASIC15.38■□□□□ 0.05
LDB3O75112 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
LDB3O75112 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.38■□□□□ 0.05
LDB3O75112 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC15.38■□□□□ 0.05
LDB3O75112 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
LDB3O75112 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.38■□□□□ 0.05
LDB3O75112 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC15.38■□□□□ 0.05
LDB3O75112 AL589702.1-201ENST00000641229 1509 ntBASIC15.38■□□□□ 0.05
LDB3O75112 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.38■□□□□ 0.05
LDB3O75112 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
LDB3O75112 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 LINC02199-201ENST00000506655 2702 ntBASIC15.37■□□□□ 0.05
LDB3O75112 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC15.37■□□□□ 0.05
LDB3O75112 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.37■□□□□ 0.05
LDB3O75112 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
LDB3O75112 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC15.37■□□□□ 0.05
LDB3O75112 SRPK3-201ENST00000370100 1717 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
LDB3O75112 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
LDB3O75112 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC15.37■□□□□ 0.05
LDB3O75112 MAPT-201ENST00000262410 6762 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC15.37■□□□□ 0.05
LDB3O75112 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
LDB3O75112 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.1 ms