Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 JRK-203ENST00000571961 2687 ntAPPRIS ALT2 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 STK24-203ENST00000397517 4578 ntTSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.43□□□□□ -0.1
LMX1BO60663 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.43□□□□□ -0.1
LMX1BO60663 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC14.43□□□□□ -0.1
LMX1BO60663 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 AL596257.1-201ENST00000641463 2694 ntBASIC14.42□□□□□ -0.1
LMX1BO60663 PCGF3-213ENST00000620529 1899 ntBASIC14.42□□□□□ -0.1
LMX1BO60663 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
LMX1BO60663 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.42□□□□□ -0.1
LMX1BO60663 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.42□□□□□ -0.1
LMX1BO60663 PNMT-202ENST00000394246 821 ntTSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC14.42□□□□□ -0.1
LMX1BO60663 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC14.42□□□□□ -0.1
LMX1BO60663 AC091167.2-201ENST00000579581 588 ntBASIC14.42□□□□□ -0.1
LMX1BO60663 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC14.42□□□□□ -0.1
LMX1BO60663 AC092364.2-202ENST00000597012 1073 ntBASIC14.42□□□□□ -0.1
LMX1BO60663 AL513190.1-201ENST00000621254 727 ntBASIC14.42□□□□□ -0.1
LMX1BO60663 TRIM29-221ENST00000627238 510 ntTSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC14.42□□□□□ -0.1
LMX1BO60663 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 SEPT11-203ENST00000502584 2615 ntAPPRIS ALT1 TSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC14.42□□□□□ -0.1
LMX1BO60663 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC14.42□□□□□ -0.1
LMX1BO60663 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC14.42□□□□□ -0.1
LMX1BO60663 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 FER1L4-210ENST00000615531 5998 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 ELL2P1-201ENST00000413990 1906 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 ADAMTS18-201ENST00000282849 5913 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 ATP6V0CP3-201ENST00000417255 467 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 HCG4B-203ENST00000450128 991 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 RPS15P9-201ENST00000494093 319 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 IGHV3-65-201ENST00000523210 341 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 AC008667.4-201ENST00000607370 168 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 AL078644.1-201ENST00000609881 752 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 AC004790.2-201ENST00000623588 572 ntBASIC14.41□□□□□ -0.1
LMX1BO60663 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.41□□□□□ -0.1
LMX1BO60663 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 MBD4-206ENST00000507208 2194 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
LMX1BO60663 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC14.41□□□□□ -0.1
LMX1BO60663 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC14.41□□□□□ -0.1
LMX1BO60663 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms