Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 AL136982.4-201ENST00000437689 1740 ntBASIC16.19■□□□□ 0.18
COL25A1Q9BXS0 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.19■□□□□ 0.18
COL25A1Q9BXS0 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL25A1Q9BXS0 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.19■□□□□ 0.18
COL25A1Q9BXS0 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC16.19■□□□□ 0.18
COL25A1Q9BXS0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 FXYD6-211ENST00000539526 2132 ntAPPRIS P2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 TUBB8P8-201ENST00000458717 1058 ntBASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 POU5F1P6-201ENST00000466990 990 ntBASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 AC093627.5-203ENST00000497320 746 ntTSL 2 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 KRT18P25-201ENST00000508931 1278 ntBASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 LINC01517-203ENST00000616194 908 ntTSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 AC068790.8-201ENST00000618862 504 ntAPPRIS P1 TSL 3 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 AL645728.2-202ENST00000641679 227 ntBASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 TAF15-211ENST00000604841 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
COL25A1Q9BXS0 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 KCNQ5-202ENST00000355194 6566 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 TOMM22P5-201ENST00000416399 439 ntBASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 AC074338.1-201ENST00000416825 156 ntBASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 MRPS36-204ENST00000512880 1200 ntTSL 5 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 EVX1-AS-203ENST00000519218 554 ntTSL 4 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 MRPS36-205ENST00000602380 1200 ntTSL 2 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 GHRHR-212ENST00000611037 923 ntTSL 5 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 AL627230.2-201ENST00000613254 655 ntBASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 AC022748.3-201ENST00000621828 275 ntBASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 CTSV-201ENST00000259470 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 TBC1D3J-201ENST00000620719 1426 ntBASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 ZNF346-201ENST00000358149 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
COL25A1Q9BXS0 ABI3-202ENST00000419580 1718 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CTSL-202ENST00000342020 933 ntTSL 2 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CRHR1-205ENST00000352855 1146 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 AP000356.3-201ENST00000382243 753 ntBASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CIDEC-202ENST00000383817 1199 ntAPPRIS ALT1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 MPC1L-201ENST00000423387 571 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 SYT17-208ENST00000568433 812 ntTSL 3 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 AC093330.1-206ENST00000582546 812 ntTSL 3 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 SELENOW-204ENST00000595615 535 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 AC138894.2-201ENST00000602838 371 ntBASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 SELENOW-216ENST00000612212 875 ntTSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
COL25A1Q9BXS0 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms