Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PTCHD3P3-201ENST00000403073 906 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PAWRP1-201ENST00000451083 565 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 EMBP1-201ENST00000458200 901 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 MIR4492-201ENST00000581627 80 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 AL139011.1-202ENST00000642063 584 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 SLC17A5-201ENST00000355773 3455 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 STRN3-201ENST00000355683 3970 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 NORAD-201ENST00000565493 5339 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 PI4KAP1-204ENST00000612579 1703 ntBASIC14.35□□□□□ -0.11
NKX3-1Q99801 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NKX3-1Q99801 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NKX3-1Q99801 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 ABCG4-205ENST00000619701 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 SEC61G-203ENST00000415949 732 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 SLC25A6P2-201ENST00000497974 877 ntBASIC14.34□□□□□ -0.11
NKX3-1Q99801 AC106795.1-205ENST00000512851 1056 ntBASIC14.34□□□□□ -0.11
NKX3-1Q99801 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 PAM16-208ENST00000573553 722 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 MIF4GD-205ENST00000578305 569 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 REXO1L3P-201ENST00000622202 1288 ntBASIC14.34□□□□□ -0.11
NKX3-1Q99801 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 REPIN1-209ENST00000479668 3182 ntTSL 2 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NKX3-1Q99801 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC14.34□□□□□ -0.11
NKX3-1Q99801 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NKX3-1Q99801 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NKX3-1Q99801 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NKX3-1Q99801 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
NKX3-1Q99801 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
NKX3-1Q99801 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
NKX3-1Q99801 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.33□□□□□ -0.12
NKX3-1Q99801 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.9 ms