Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 AC112191.1-201ENST00000523689 701 ntBASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 AC027612.4-201ENST00000605371 583 ntBASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 F11R-206ENST00000621309 4770 ntTSL 5 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC16.03■□□□□ 0.16
PTCHD3Q3KNS1 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 AL513523.2-202ENST00000427283 2040 ntBASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 AC006449.6-201ENST00000612330 2296 ntBASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 FRMD6-AS1-201ENST00000617151 2229 ntBASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 REXO1L8P-201ENST00000604378 1897 ntBASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 AC092474.2-201ENST00000424288 719 ntBASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC16.02■□□□□ 0.16
PTCHD3Q3KNS1 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 JMY-201ENST00000396137 9042 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 AL596087.1-201ENST00000400979 1969 ntBASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 PCDHA1-201ENST00000378133 2726 ntBASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 TPPP-201ENST00000360578 6022 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 SMAP1-201ENST00000316999 2403 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTCHD3Q3KNS1 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SP2-201ENST00000376741 3112 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 FAM184A-214ENST00000621231 4048 ntTSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 FGFR3-204ENST00000412135 3951 ntTSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTCHD3Q3KNS1 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 71.4 ms