Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 PKD1P5-201ENST00000532415 10291 ntBASIC15.76■□□□□ 0.11
COL28A1Q2UY09 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
COL28A1Q2UY09 CDK4-201ENST00000257904 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 SLC25A1P3-201ENST00000395415 828 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AC234783.1-201ENST00000441761 496 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 GNAQP1-201ENST00000444815 1067 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 C11orf98-201ENST00000524958 654 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AP005482.1-201ENST00000563722 1273 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 WASH4P-201ENST00000564273 1246 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AC009407.1-201ENST00000568958 598 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RN7SL219P-201ENST00000582872 296 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 AC008494.3-201ENST00000606615 944 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RNA5-8SN1-201ENST00000610460 153 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RNA5-8SN5-202ENST00000612463 153 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RNA5-8SN4-201ENST00000613359 153 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RNA5-8SN5-201ENST00000619471 153 ntBASIC15.75■□□□□ 0.11
COL28A1Q2UY09 LINC01759-203ENST00000635271 888 ntTSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 CACNA1A-238ENST00000637276 7135 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.75■□□□□ 0.11
COL28A1Q2UY09 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 MIR346-201ENST00000362234 95 ntBASIC15.74■□□□□ 0.11
COL28A1Q2UY09 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 TTTY23B-201ENST00000442790 549 ntBASIC15.74■□□□□ 0.11
COL28A1Q2UY09 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 AC107918.2-201ENST00000530817 355 ntBASIC15.74■□□□□ 0.11
COL28A1Q2UY09 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
COL28A1Q2UY09 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms