Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
ABCA4P78363 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ABCA4P78363 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 RBM4-204ENST00000408993 1763 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
ABCA4P78363 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.05□□□□□ -0.16
ABCA4P78363 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
ABCA4P78363 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
ABCA4P78363 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC14.05□□□□□ -0.16
ABCA4P78363 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 AL157832.1-201ENST00000428273 495 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 HSPB7-207ENST00000487046 844 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC14.05□□□□□ -0.16
ABCA4P78363 MIR4525-201ENST00000580000 75 ntBASIC14.05□□□□□ -0.16
ABCA4P78363 RPS15-212ENST00000593052 629 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 GPR182-203ENST00000622922 591 ntBASIC14.05□□□□□ -0.16
ABCA4P78363 AC141586.5-201ENST00000624546 2050 ntBASIC14.05□□□□□ -0.16
ABCA4P78363 SELENBP1-201ENST00000368868 1752 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 AL031731.1-201ENST00000642131 2094 ntBASIC14.05□□□□□ -0.16
ABCA4P78363 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 ZNF470-201ENST00000330619 7151 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.05□□□□□ -0.16
ABCA4P78363 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ABCA4P78363 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 AC112492.5-201ENST00000421897 457 ntBASIC14.04□□□□□ -0.16
ABCA4P78363 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 AC119751.2-201ENST00000504529 210 ntBASIC14.04□□□□□ -0.16
ABCA4P78363 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC14.04□□□□□ -0.16
ABCA4P78363 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC14.04□□□□□ -0.16
ABCA4P78363 AC092337.1-201ENST00000568699 1129 ntBASIC14.04□□□□□ -0.16
ABCA4P78363 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC14.04□□□□□ -0.16
ABCA4P78363 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC14.04□□□□□ -0.16
ABCA4P78363 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.04□□□□□ -0.16
ABCA4P78363 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC14.04□□□□□ -0.16
ABCA4P78363 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.04□□□□□ -0.16
ABCA4P78363 NAA38-207ENST00000576861 556 ntTSL 3 BASIC14.04□□□□□ -0.16
ABCA4P78363 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC14.04□□□□□ -0.16
ABCA4P78363 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ABCA4P78363 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 VGLL4-202ENST00000413604 1554 ntTSL 2 BASIC14.04□□□□□ -0.16
ABCA4P78363 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms