Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 EIF4G1-206ENST00000392537 5229 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 TEX30-205ENST00000376029 959 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC14.66□□□□□ -0.06
CLRN1P58418 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC14.66□□□□□ -0.06
CLRN1P58418 KRT18P34-201ENST00000488218 1270 ntBASIC14.66□□□□□ -0.06
CLRN1P58418 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.66□□□□□ -0.06
CLRN1P58418 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.66□□□□□ -0.06
CLRN1P58418 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC14.66□□□□□ -0.06
CLRN1P58418 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.66□□□□□ -0.06
CLRN1P58418 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC14.66□□□□□ -0.06
CLRN1P58418 AC068137.2-201ENST00000605408 478 ntBASIC14.66□□□□□ -0.06
CLRN1P58418 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC14.66□□□□□ -0.06
CLRN1P58418 AL391005.1-201ENST00000623953 2435 ntBASIC14.66□□□□□ -0.06
CLRN1P58418 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 HS6ST3-201ENST00000376705 7804 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 AC005622.1-201ENST00000636801 1703 ntBASIC14.66□□□□□ -0.06
CLRN1P58418 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.66□□□□□ -0.06
CLRN1P58418 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC14.66□□□□□ -0.06
CLRN1P58418 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 MBD1-224ENST00000591416 4905 ntAPPRIS P3 TSL 5 BASIC14.65□□□□□ -0.06
CLRN1P58418 DAB2IP-201ENST00000259371 5469 ntAPPRIS P4 TSL 5 BASIC14.65□□□□□ -0.06
CLRN1P58418 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 COL5A1-201ENST00000371817 8471 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 AC026691.1-201ENST00000602502 2017 ntBASIC14.65□□□□□ -0.06
CLRN1P58418 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.65□□□□□ -0.06
CLRN1P58418 AC074386.1-202ENST00000463561 864 ntBASIC14.65□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms