Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC22.33■■□□□ 1.16
MSH6P52701 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC22.33■■□□□ 1.16
MSH6P52701 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 FST-202ENST00000396947 2538 ntTSL 5 BASIC22.33■■□□□ 1.16
MSH6P52701 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
MSH6P52701 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC22.32■■□□□ 1.16
MSH6P52701 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 LINC02012-201ENST00000608206 1725 ntBASIC22.32■■□□□ 1.16
MSH6P52701 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 RELA-227ENST00000615805 2236 ntTSL 5 BASIC22.32■■□□□ 1.16
MSH6P52701 THEG-201ENST00000342640 1877 ntAPPRIS P4 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC22.32■■□□□ 1.16
MSH6P52701 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH6P52701 HYAL3-206ENST00000513170 636 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC22.32■■□□□ 1.16
MSH6P52701 AC022903.1-201ENST00000579327 469 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC22.32■■□□□ 1.16
MSH6P52701 METTL26-214ENST00000614890 801 ntTSL 3 BASIC22.32■■□□□ 1.16
MSH6P52701 AC005252.2-201ENST00000624630 1141 ntBASIC22.32■■□□□ 1.16
MSH6P52701 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 HARS-202ENST00000415192 1401 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
MSH6P52701 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC22.32■■□□□ 1.16
MSH6P52701 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC22.32■■□□□ 1.16
MSH6P52701 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC22.32■■□□□ 1.16
MSH6P52701 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
MSH6P52701 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH6P52701 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH6P52701 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH6P52701 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 EMC3-AS1-202ENST00000366264 559 ntTSL 4 BASIC22.31■■□□□ 1.16
MSH6P52701 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC22.31■■□□□ 1.16
MSH6P52701 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH6P52701 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC22.31■■□□□ 1.16
MSH6P52701 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 C2orf27AP3-201ENST00000434123 579 ntBASIC22.31■■□□□ 1.16
MSH6P52701 AL358393.1-201ENST00000456771 532 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 PFN2-215ENST00000497148 743 ntTSL 4 BASIC22.31■■□□□ 1.16
MSH6P52701 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 U62317.3-201ENST00000608319 855 ntBASIC22.31■■□□□ 1.16
MSH6P52701 AL354718.3-201ENST00000616414 581 ntBASIC22.31■■□□□ 1.16
MSH6P52701 CR382287.1-201ENST00000623954 586 ntBASIC22.31■■□□□ 1.16
MSH6P52701 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
MSH6P52701 BOC-212ENST00000485230 2173 ntTSL 2 BASIC22.31■■□□□ 1.16
MSH6P52701 PKIG-204ENST00000372889 1489 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
MSH6P52701 GPAA1P2-202ENST00000606848 1787 ntBASIC22.31■■□□□ 1.16
MSH6P52701 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC22.31■■□□□ 1.16
MSH6P52701 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
MSH6P52701 AC005332.8-201ENST00000622750 2735 ntBASIC22.3■■□□□ 1.16
MSH6P52701 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC22.3■■□□□ 1.16
MSH6P52701 AL512652.2-201ENST00000625156 1716 ntBASIC22.3■■□□□ 1.16
MSH6P52701 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 AL138688.1-201ENST00000624851 1594 ntBASIC22.3■■□□□ 1.16
MSH6P52701 TMEM198-201ENST00000344458 2393 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 MTHFSD-202ENST00000381214 1210 ntAPPRIS ALT2 TSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 CNN2P8-201ENST00000421872 913 ntBASIC22.3■■□□□ 1.16
MSH6P52701 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC22.3■■□□□ 1.16
MSH6P52701 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC22.3■■□□□ 1.16
MSH6P52701 AC005077.2-201ENST00000449786 690 ntBASIC22.3■■□□□ 1.16
MSH6P52701 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC22.3■■□□□ 1.16
MSH6P52701 AL591846.1-201ENST00000451736 433 ntBASIC22.3■■□□□ 1.16
MSH6P52701 CHL1-AS2-203ENST00000452919 726 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 EIF4HP1-201ENST00000453115 687 ntBASIC22.3■■□□□ 1.16
MSH6P52701 ADM-202ENST00000524948 584 ntTSL 2 BASIC22.3■■□□□ 1.16
MSH6P52701 MIR4706-201ENST00000582134 82 ntBASIC22.3■■□□□ 1.16
MSH6P52701 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC22.3■■□□□ 1.16
MSH6P52701 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC22.3■■□□□ 1.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms