Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 PTCRA-202ENST00000441198 1005 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 PTCRA-203ENST00000446507 759 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXA1P49639 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC13.68□□□□□ -0.22
HOXA1P49639 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 KRT8P26-201ENST00000534154 1276 ntBASIC13.68□□□□□ -0.22
HOXA1P49639 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC13.68□□□□□ -0.22
HOXA1P49639 USP36-201ENST00000312010 5234 ntAPPRIS P2 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 AC132938.5-201ENST00000624980 1813 ntBASIC13.68□□□□□ -0.22
HOXA1P49639 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC13.68□□□□□ -0.22
HOXA1P49639 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC13.68□□□□□ -0.22
HOXA1P49639 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 PTPRO-201ENST00000281171 5301 ntAPPRIS P3 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.22
HOXA1P49639 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC13.68□□□□□ -0.22
HOXA1P49639 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 PTPN9-206ENST00000618819 7813 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 PLXNC1-202ENST00000545312 1813 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 MLX-202ENST00000346833 2334 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 PLPP2-201ENST00000269812 1228 ntTSL 3 BASIC13.67□□□□□ -0.22
HOXA1P49639 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC13.67□□□□□ -0.22
HOXA1P49639 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 ABR-204ENST00000543210 1049 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.67□□□□□ -0.22
HOXA1P49639 ABR-217ENST00000572441 563 ntTSL 4 BASIC13.67□□□□□ -0.22
HOXA1P49639 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 LINC01023-201ENST00000606054 436 ntBASIC13.67□□□□□ -0.22
HOXA1P49639 NDUFV2-AS1-203ENST00000608008 779 ntBASIC13.67□□□□□ -0.22
HOXA1P49639 AC126755.2-202ENST00000427999 1547 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 HSDL2-202ENST00000398805 3350 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 RBFADN-201ENST00000562391 1350 ntTSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 GLI2-203ENST00000361492 6768 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 FRMD5-209ENST00000484674 2319 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC13.67□□□□□ -0.22
HOXA1P49639 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC13.67□□□□□ -0.22
HOXA1P49639 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.67□□□□□ -0.22
HOXA1P49639 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC13.66□□□□□ -0.22
HOXA1P49639 APBA1-201ENST00000265381 6534 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
HOXA1P49639 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC13.66□□□□□ -0.22
HOXA1P49639 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
HOXA1P49639 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC13.66□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms