Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC26.85■■□□□ 1.89
CUX1P39880 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
CUX1P39880 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC26.85■■□□□ 1.89
CUX1P39880 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC26.85■■□□□ 1.89
CUX1P39880 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC26.85■■□□□ 1.89
CUX1P39880 AC134312.5-201ENST00000568031 1313 ntBASIC26.85■■□□□ 1.89
CUX1P39880 NF2-208ENST00000403435 2568 ntTSL 5 BASIC26.85■■□□□ 1.89
CUX1P39880 ZBTB12BP-201ENST00000314232 1122 ntBASIC26.85■■□□□ 1.89
CUX1P39880 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC26.85■■□□□ 1.89
CUX1P39880 AC016694.1-201ENST00000434179 700 ntBASIC26.85■■□□□ 1.89
CUX1P39880 ARL16-210ENST00000574938 751 ntTSL 2 BASIC26.85■■□□□ 1.89
CUX1P39880 AC107373.2-201ENST00000607735 490 ntBASIC26.85■■□□□ 1.89
CUX1P39880 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC26.85■■□□□ 1.89
CUX1P39880 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC26.85■■□□□ 1.89
CUX1P39880 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 RCAN1-212ENST00000492600 935 ntTSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 RHOQP1-201ENST00000555758 579 ntBASIC26.84■■□□□ 1.89
CUX1P39880 AP001063.1-201ENST00000568332 529 ntBASIC26.84■■□□□ 1.89
CUX1P39880 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CUX1P39880 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC26.84■■□□□ 1.89
CUX1P39880 AL121723.1-201ENST00000445194 1519 ntBASIC26.83■■□□□ 1.89
CUX1P39880 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC26.83■■□□□ 1.89
CUX1P39880 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC26.83■■□□□ 1.89
CUX1P39880 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 AL645608.8-201ENST00000606034 2086 ntBASIC26.83■■□□□ 1.89
CUX1P39880 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC26.83■■□□□ 1.89
CUX1P39880 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC26.83■■□□□ 1.89
CUX1P39880 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC26.83■■□□□ 1.89
CUX1P39880 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC26.83■■□□□ 1.89
CUX1P39880 RNA5SP423-201ENST00000517127 109 ntBASIC26.83■■□□□ 1.89
CUX1P39880 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 AC012568.1-201ENST00000558463 472 ntTSL 2 BASIC26.83■■□□□ 1.89
CUX1P39880 AC009486.1-201ENST00000569860 813 ntBASIC26.83■■□□□ 1.89
CUX1P39880 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 VILL-207ENST00000465644 1857 ntTSL 5 BASIC26.83■■□□□ 1.89
CUX1P39880 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC26.83■■□□□ 1.89
CUX1P39880 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC26.83■■□□□ 1.89
CUX1P39880 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
CUX1P39880 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC26.82■■□□□ 1.88
CUX1P39880 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC26.82■■□□□ 1.88
CUX1P39880 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC26.82■■□□□ 1.88
CUX1P39880 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC26.82■■□□□ 1.88
CUX1P39880 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 RNF216P1-203ENST00000404404 2427 ntBASIC26.82■■□□□ 1.88
CUX1P39880 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC26.82■■□□□ 1.88
CUX1P39880 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC26.82■■□□□ 1.88
CUX1P39880 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 BRF1-202ENST00000379932 884 ntTSL 5 BASIC26.82■■□□□ 1.88
CUX1P39880 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC26.82■■□□□ 1.88
CUX1P39880 PFN1P12-201ENST00000455938 534 ntBASIC26.82■■□□□ 1.88
CUX1P39880 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC26.82■■□□□ 1.88
CUX1P39880 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC26.82■■□□□ 1.88
CUX1P39880 AC079316.1-201ENST00000548397 411 ntBASIC26.82■■□□□ 1.88
CUX1P39880 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 AC015910.1-201ENST00000579400 975 ntBASIC26.82■■□□□ 1.88
CUX1P39880 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC26.82■■□□□ 1.88
CUX1P39880 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC26.82■■□□□ 1.88
CUX1P39880 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC26.82■■□□□ 1.88
CUX1P39880 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CUX1P39880 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC26.82■■□□□ 1.88
CUX1P39880 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CUX1P39880 C1orf123-201ENST00000294360 1085 ntAPPRIS P1 TSL 1 (best) BASIC26.81■■□□□ 1.88
CUX1P39880 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 KRT18P43-201ENST00000469825 1281 ntBASIC26.81■■□□□ 1.88
CUX1P39880 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC26.81■■□□□ 1.88
CUX1P39880 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
CUX1P39880 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC26.81■■□□□ 1.88
CUX1P39880 AC005695.3-201ENST00000614522 232 ntBASIC26.81■■□□□ 1.88
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms