Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CRHR2-208ENST00000506074 3109 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 RNF145-212ENST00000611185 3624 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
MSX2P35548 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
MSX2P35548 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 TAF4B-203ENST00000578121 3204 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 PCNX3-201ENST00000355703 7105 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MSX2P35548 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 HEBP2-201ENST00000367697 844 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 VENTXP7-201ENST00000475503 772 ntBASIC15.68■□□□□ 0.1
MSX2P35548 AC096582.2-201ENST00000510860 516 ntBASIC15.68■□□□□ 0.1
MSX2P35548 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC15.68■□□□□ 0.1
MSX2P35548 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC15.68■□□□□ 0.1
MSX2P35548 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 H2BFWT-202ENST00000611083 528 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 AL590326.2-201ENST00000625139 305 ntBASIC15.68■□□□□ 0.1
MSX2P35548 ABBA01031661.1-201ENST00000634362 1253 ntBASIC15.68■□□□□ 0.1
MSX2P35548 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
MSX2P35548 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC15.68■□□□□ 0.1
MSX2P35548 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.68■□□□□ 0.1
MSX2P35548 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
MSX2P35548 AC007686.3-201ENST00000619017 3487 ntBASIC15.67■□□□□ 0.1
MSX2P35548 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 HPGD-202ENST00000296522 3027 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 AC067930.6-201ENST00000623257 4947 ntBASIC15.67■□□□□ 0.1
MSX2P35548 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 HYI-201ENST00000372425 1265 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 AC104076.2-201ENST00000448912 469 ntBASIC15.67■□□□□ 0.1
MSX2P35548 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC15.67■□□□□ 0.1
MSX2P35548 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC15.67■□□□□ 0.1
MSX2P35548 NTF6B-201ENST00000591913 560 ntBASIC15.67■□□□□ 0.1
MSX2P35548 BNIP3P18-201ENST00000593976 575 ntBASIC15.67■□□□□ 0.1
MSX2P35548 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 AC010654.1-201ENST00000615722 808 ntBASIC15.67■□□□□ 0.1
MSX2P35548 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 INPP5K-201ENST00000320345 2880 ntTSL 5 BASIC15.67■□□□□ 0.1
MSX2P35548 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
MSX2P35548 AC139749.1-202ENST00000617529 3139 ntBASIC15.67■□□□□ 0.1
MSX2P35548 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC15.67■□□□□ 0.1
MSX2P35548 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.67■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms