Protein–RNA interactions for Protein: P32297

CHRNA3, Neuronal acetylcholine receptor subunit alpha-3, humanhuman

Predictions only

Length 505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3P32297 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA3P32297 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA3P32297 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA3P32297 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA3P32297 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA3P32297 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CHRNA3P32297 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CHRNA3P32297 RTL6-201ENST00000341255 5495 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CHRNA3P32297 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 AC104640.1-201ENST00000562617 2109 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 HYMAI-201ENST00000635591 3347 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17.3■□□□□ 0.36
CHRNA3P32297 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC17.3■□□□□ 0.36
CHRNA3P32297 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC17.3■□□□□ 0.36
CHRNA3P32297 AC092384.3-202ENST00000564646 2873 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC17.3■□□□□ 0.36
CHRNA3P32297 AP000763.4-201ENST00000544674 752 ntTSL 5 BASIC17.3■□□□□ 0.36
CHRNA3P32297 AC096734.2-201ENST00000562054 433 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 AC139530.3-201ENST00000620344 690 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.3■□□□□ 0.36
CHRNA3P32297 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
CHRNA3P32297 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC17.3■□□□□ 0.36
CHRNA3P32297 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC17.3■□□□□ 0.36
CHRNA3P32297 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 TFR2-202ENST00000431692 2631 ntTSL 5 BASIC17.3■□□□□ 0.36
CHRNA3P32297 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CHRNA3P32297 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 SLAIN2-201ENST00000264313 6299 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.29■□□□□ 0.36
CHRNA3P32297 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 PCGF3-213ENST00000620529 1899 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 MIR1233-2-201ENST00000408138 82 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 MIR1233-1-201ENST00000408722 82 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 DNAJB3-201ENST00000446806 729 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 AC087163.2-201ENST00000457299 853 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 COX5A-206ENST00000568783 571 ntTSL 3 BASIC17.29■□□□□ 0.36
CHRNA3P32297 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 AC091167.2-201ENST00000579581 588 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 CYB561-216ENST00000582297 897 ntTSL 3 BASIC17.29■□□□□ 0.36
CHRNA3P32297 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.29■□□□□ 0.36
CHRNA3P32297 REXO1L3P-201ENST00000622202 1288 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 AC010507.1-201ENST00000633895 436 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 AC092865.6-201ENST00000642101 219 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 GPAA1P2-202ENST00000606848 1787 ntBASIC17.29■□□□□ 0.36
CHRNA3P32297 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CHRNA3P32297 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.29■□□□□ 0.36
CHRNA3P32297 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
CHRNA3P32297 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.29■□□□□ 0.36
CHRNA3P32297 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 DUOX1-202ENST00000389037 5483 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
CHRNA3P32297 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA3P32297 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
CHRNA3P32297 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA3P32297 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
CHRNA3P32297 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA3P32297 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA3P32297 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA3P32297 UPF3AP3-201ENST00000420996 769 ntBASIC17.28■□□□□ 0.36
CHRNA3P32297 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
CHRNA3P32297 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC17.28■□□□□ 0.36
CHRNA3P32297 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.28■□□□□ 0.36
CHRNA3P32297 AC010327.4-202ENST00000591484 748 ntBASIC17.28■□□□□ 0.36
CHRNA3P32297 MTDHP5-201ENST00000598980 586 ntBASIC17.28■□□□□ 0.36
CHRNA3P32297 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.28■□□□□ 0.36
CHRNA3P32297 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms