Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC16.63■□□□□ 0.25
VCANP13611 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 LINC01056-201ENST00000455711 1234 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 FBXO24-204ENST00000465843 957 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.63■□□□□ 0.25
VCANP13611 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
VCANP13611 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 MIR769-201ENST00000390225 118 ntBASIC16.63■□□□□ 0.25
VCANP13611 RPSAP31-201ENST00000416648 895 ntBASIC16.63■□□□□ 0.25
VCANP13611 MSRA-203ENST00000441698 788 ntTSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC16.63■□□□□ 0.25
VCANP13611 HNRNPA1P48-202ENST00000565308 961 ntBASIC16.63■□□□□ 0.25
VCANP13611 AC005252.2-201ENST00000624630 1141 ntBASIC16.63■□□□□ 0.25
VCANP13611 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC16.63■□□□□ 0.25
VCANP13611 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC16.63■□□□□ 0.25
VCANP13611 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC16.63■□□□□ 0.25
VCANP13611 AL589702.1-201ENST00000641229 1509 ntBASIC16.63■□□□□ 0.25
VCANP13611 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
VCANP13611 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 MYCN-202ENST00000638417 1693 ntTSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC16.63■□□□□ 0.25
VCANP13611 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
VCANP13611 AL391832.2-201ENST00000418557 889 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
VCANP13611 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC16.63■□□□□ 0.25
VCANP13611 POM121L10P-201ENST00000436994 1285 ntBASIC16.63■□□□□ 0.25
VCANP13611 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.63■□□□□ 0.25
VCANP13611 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCANP13611 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.62■□□□□ 0.25
VCANP13611 Z97205.2-201ENST00000564697 1639 ntBASIC16.62■□□□□ 0.25
VCANP13611 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 CEP164P1-201ENST00000455142 418 ntBASIC16.62■□□□□ 0.25
VCANP13611 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC16.62■□□□□ 0.25
VCANP13611 AC008403.1-201ENST00000595676 443 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
VCANP13611 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.62■□□□□ 0.25
VCANP13611 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCANP13611 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC16.62■□□□□ 0.25
VCANP13611 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.62■□□□□ 0.25
VCANP13611 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.62■□□□□ 0.25
VCANP13611 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
VCANP13611 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
VCANP13611 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 COX5BP1-201ENST00000507622 393 ntBASIC16.62■□□□□ 0.25
VCANP13611 MPDU1-223ENST00000582151 728 ntBASIC16.62■□□□□ 0.25
VCANP13611 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC16.62■□□□□ 0.25
VCANP13611 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
VCANP13611 AL365199.1-201ENST00000421320 1714 ntTSL 2 BASIC16.62■□□□□ 0.25
VCANP13611 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
VCANP13611 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 SAP30L-203ENST00000440364 792 ntTSL 3 BASIC16.61■□□□□ 0.25
VCANP13611 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC16.61■□□□□ 0.25
VCANP13611 ZNF586-204ENST00000598183 603 ntTSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 AL645939.5-201ENST00000606834 243 ntBASIC16.61■□□□□ 0.25
VCANP13611 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.61■□□□□ 0.25
VCANP13611 REXO1L8P-201ENST00000604378 1897 ntBASIC16.61■□□□□ 0.25
VCANP13611 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC16.61■□□□□ 0.25
VCANP13611 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC16.61■□□□□ 0.25
VCANP13611 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC16.61■□□□□ 0.25
VCANP13611 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC16.61■□□□□ 0.25
VCANP13611 AL022344.2-201ENST00000568976 968 ntBASIC16.61■□□□□ 0.25
VCANP13611 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC16.61■□□□□ 0.25
VCANP13611 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC16.61■□□□□ 0.25
VCANP13611 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC16.61■□□□□ 0.25
VCANP13611 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms