Protein–RNA interactions for Protein: P0C091

FREM3, FRAS1-related extracellular matrix protein 3, humanhuman

Predictions only

Length 2,139 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FREM3P0C091 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.84□□□□□ -0.03
FREM3P0C091 HCG11-201ENST00000411553 5696 ntBASIC14.84□□□□□ -0.03
FREM3P0C091 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC14.84□□□□□ -0.03
FREM3P0C091 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC14.84□□□□□ -0.03
FREM3P0C091 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC14.84□□□□□ -0.03
FREM3P0C091 AC100757.3-201ENST00000622361 1406 ntBASIC14.84□□□□□ -0.03
FREM3P0C091 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC14.84□□□□□ -0.03
FREM3P0C091 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 CERNA1-201ENST00000559779 908 ntTSL 3 BASIC14.84□□□□□ -0.03
FREM3P0C091 AC061975.2-201ENST00000581722 295 ntBASIC14.84□□□□□ -0.03
FREM3P0C091 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC14.84□□□□□ -0.03
FREM3P0C091 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.84□□□□□ -0.03
FREM3P0C091 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
FREM3P0C091 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.84□□□□□ -0.03
FREM3P0C091 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC14.84□□□□□ -0.03
FREM3P0C091 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.83□□□□□ -0.03
FREM3P0C091 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
FREM3P0C091 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC14.83□□□□□ -0.03
FREM3P0C091 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FREM3P0C091 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
FREM3P0C091 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.83□□□□□ -0.03
FREM3P0C091 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.83□□□□□ -0.03
FREM3P0C091 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC14.83□□□□□ -0.04
FREM3P0C091 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
FREM3P0C091 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.83□□□□□ -0.04
FREM3P0C091 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.83□□□□□ -0.04
FREM3P0C091 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.83□□□□□ -0.04
FREM3P0C091 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 RPL13-214ENST00000567815 712 ntAPPRIS P1 TSL 3 BASIC14.83□□□□□ -0.04
FREM3P0C091 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC14.83□□□□□ -0.04
FREM3P0C091 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC14.83□□□□□ -0.04
FREM3P0C091 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC14.83□□□□□ -0.04
FREM3P0C091 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC14.83□□□□□ -0.04
FREM3P0C091 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.83□□□□□ -0.04
FREM3P0C091 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.83□□□□□ -0.04
FREM3P0C091 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.83□□□□□ -0.04
FREM3P0C091 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC14.83□□□□□ -0.04
FREM3P0C091 AL390754.1-201ENST00000619088 582 ntBASIC14.83□□□□□ -0.04
FREM3P0C091 RANBP10-201ENST00000317506 5341 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 RANBP10-209ENST00000630626 5305 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
FREM3P0C091 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 AC132872.4-202ENST00000622924 2756 ntBASIC14.83□□□□□ -0.04
FREM3P0C091 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC14.83□□□□□ -0.04
FREM3P0C091 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC14.83□□□□□ -0.04
FREM3P0C091 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC14.82□□□□□ -0.04
FREM3P0C091 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FREM3P0C091 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
FREM3P0C091 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.82□□□□□ -0.04
FREM3P0C091 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FREM3P0C091 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.82□□□□□ -0.04
FREM3P0C091 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
FREM3P0C091 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC14.82□□□□□ -0.04
FREM3P0C091 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
FREM3P0C091 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC14.82□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms