Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SIX3O95343 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC16.03■□□□□ 0.16
SIX3O95343 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.03■□□□□ 0.16
SIX3O95343 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SIX3O95343 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SIX3O95343 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 METTL26-205ENST00000397666 726 ntTSL 2 BASIC16.03■□□□□ 0.16
SIX3O95343 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SIX3O95343 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 CRYGEP-201ENST00000412192 528 ntBASIC16.03■□□□□ 0.16
SIX3O95343 IGHV3-22-201ENST00000520721 359 ntBASIC16.03■□□□□ 0.16
SIX3O95343 NCAM1-AS1-202ENST00000533638 618 ntTSL 4 BASIC16.03■□□□□ 0.16
SIX3O95343 AP001005.1-201ENST00000571755 1248 ntBASIC16.03■□□□□ 0.16
SIX3O95343 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 FOXP1-223ENST00000622151 429 ntTSL 3 BASIC16.03■□□□□ 0.16
SIX3O95343 AC010507.1-201ENST00000633895 436 ntBASIC16.03■□□□□ 0.16
SIX3O95343 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.03■□□□□ 0.16
SIX3O95343 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 SURF4-202ENST00000371989 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 AP005117.1-202ENST00000581724 1908 ntBASIC16.03■□□□□ 0.16
SIX3O95343 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC16.03■□□□□ 0.16
SIX3O95343 TSPY26P-202ENST00000565928 3884 ntBASIC16.03■□□□□ 0.16
SIX3O95343 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
SIX3O95343 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
SIX3O95343 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
SIX3O95343 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 AC069224.1-201ENST00000566372 1715 ntBASIC16.02■□□□□ 0.16
SIX3O95343 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.02■□□□□ 0.16
SIX3O95343 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 PMS2P4-201ENST00000412466 1052 ntBASIC16.02■□□□□ 0.16
SIX3O95343 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC16.02■□□□□ 0.16
SIX3O95343 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC16.02■□□□□ 0.16
SIX3O95343 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 RPL28-209ENST00000560055 670 ntTSL 3 BASIC16.02■□□□□ 0.16
SIX3O95343 MIR3909-201ENST00000579518 119 ntBASIC16.02■□□□□ 0.16
SIX3O95343 SLC25A6P4-201ENST00000586535 553 ntBASIC16.02■□□□□ 0.16
SIX3O95343 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.02■□□□□ 0.16
SIX3O95343 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 NCOA6-206ENST00000612493 4082 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.16
SIX3O95343 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
SIX3O95343 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.15
SIX3O95343 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.02■□□□□ 0.15
SIX3O95343 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.02■□□□□ 0.15
SIX3O95343 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
SIX3O95343 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.02■□□□□ 0.15
SIX3O95343 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC16.02■□□□□ 0.15
SIX3O95343 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
SIX3O95343 UGDH-202ENST00000501493 2826 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX3O95343 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX3O95343 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX3O95343 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.01■□□□□ 0.15
SIX3O95343 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
SIX3O95343 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.01■□□□□ 0.15
SIX3O95343 AC009078.2-202ENST00000463353 338 ntBASIC16.01■□□□□ 0.15
SIX3O95343 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC16.01■□□□□ 0.15
SIX3O95343 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX3O95343 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC16.01■□□□□ 0.15
SIX3O95343 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 KRT126P-201ENST00000549467 1181 ntBASIC16.01■□□□□ 0.15
SIX3O95343 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.01■□□□□ 0.15
SIX3O95343 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.01■□□□□ 0.15
SIX3O95343 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC16.01■□□□□ 0.15
SIX3O95343 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.01■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 44.3 ms