Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH4O15457 AC055876.3-201ENST00000431496 288 ntBASIC18.3■□□□□ 0.52
MSH4O15457 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.3■□□□□ 0.52
MSH4O15457 AC097493.3-201ENST00000509725 367 ntBASIC18.3■□□□□ 0.52
MSH4O15457 AC069120.2-201ENST00000524091 540 ntBASIC18.3■□□□□ 0.52
MSH4O15457 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH4O15457 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH4O15457 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH4O15457 AC138649.4-201ENST00000612222 287 ntBASIC18.3■□□□□ 0.52
MSH4O15457 SPDYE12P-201ENST00000618416 771 ntBASIC18.3■□□□□ 0.52
MSH4O15457 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
MSH4O15457 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.3■□□□□ 0.52
MSH4O15457 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.3■□□□□ 0.52
MSH4O15457 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
MSH4O15457 PCDHB19P-201ENST00000570871 2371 ntBASIC18.3■□□□□ 0.52
MSH4O15457 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
MSH4O15457 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.29■□□□□ 0.52
MSH4O15457 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 RBM39-205ENST00000397370 612 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH4O15457 HMGN1P19-201ENST00000436976 333 ntBASIC18.29■□□□□ 0.52
MSH4O15457 MTND6P24-201ENST00000440466 518 ntBASIC18.29■□□□□ 0.52
MSH4O15457 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH4O15457 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.29■□□□□ 0.52
MSH4O15457 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC18.29■□□□□ 0.52
MSH4O15457 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.29■□□□□ 0.52
MSH4O15457 PAM16-215ENST00000577031 548 ntTSL 4 BASIC18.29■□□□□ 0.52
MSH4O15457 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSH4O15457 GPER1-207ENST00000619052 571 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH4O15457 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC18.29■□□□□ 0.52
MSH4O15457 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC18.29■□□□□ 0.52
MSH4O15457 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
MSH4O15457 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
MSH4O15457 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
MSH4O15457 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 MIR770-201ENST00000390219 98 ntBASIC18.28■□□□□ 0.52
MSH4O15457 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
MSH4O15457 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.28■□□□□ 0.52
MSH4O15457 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 AL158211.3-201ENST00000607385 239 ntBASIC18.28■□□□□ 0.52
MSH4O15457 AL138828.2-201ENST00000615812 383 ntBASIC18.28■□□□□ 0.52
MSH4O15457 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 AL136982.4-201ENST00000437689 1740 ntBASIC18.28■□□□□ 0.52
MSH4O15457 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC18.28■□□□□ 0.52
MSH4O15457 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.28■□□□□ 0.52
MSH4O15457 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.28■□□□□ 0.52
MSH4O15457 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 GCK-209ENST00000616242 2260 ntTSL 5 BASIC18.28■□□□□ 0.52
MSH4O15457 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
MSH4O15457 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
MSH4O15457 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
MSH4O15457 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.27■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 34.3 ms