Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.26■□□□□ 0.35
CDH9Q9ULB4 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 CETN4P-206ENST00000642099 2168 ntBASIC17.25■□□□□ 0.35
CDH9Q9ULB4 REXO1L8P-201ENST00000604378 1897 ntBASIC17.25■□□□□ 0.35
CDH9Q9ULB4 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 AC027369.6-201ENST00000525520 931 ntBASIC17.25■□□□□ 0.35
CDH9Q9ULB4 SPCS2P1-201ENST00000561636 679 ntBASIC17.25■□□□□ 0.35
CDH9Q9ULB4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.25■□□□□ 0.35
CDH9Q9ULB4 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 CCDC74BP1-201ENST00000508880 1123 ntBASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AL096865.1-201ENST00000606796 927 ntBASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AL589739.1-201ENST00000607720 493 ntBASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AL138828.2-201ENST00000615812 383 ntBASIC17.24■□□□□ 0.35
CDH9Q9ULB4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 AL390754.1-201ENST00000619088 582 ntBASIC17.24■□□□□ 0.35
CDH9Q9ULB4 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.24■□□□□ 0.35
CDH9Q9ULB4 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 TMEM101-201ENST00000206380 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 AC241585.1-201ENST00000433527 519 ntBASIC17.23■□□□□ 0.35
CDH9Q9ULB4 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.23■□□□□ 0.35
CDH9Q9ULB4 BCRP1-201ENST00000444246 691 ntBASIC17.23■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms