Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC20.78■□□□□ 0.92
SHANK3Q9BYB0 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 AL121723.1-201ENST00000445194 1519 ntBASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 PFDN6-204ENST00000395131 884 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 ABBA01031663.1-201ENST00000635630 790 ntBASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 MEIKIN-203ENST00000442687 1315 ntAPPRIS P2 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
SHANK3Q9BYB0 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.77■□□□□ 0.91
SHANK3Q9BYB0 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHANK3Q9BYB0 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHANK3Q9BYB0 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
SHANK3Q9BYB0 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 BAATP1-201ENST00000412284 1225 ntBASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 KRT18P43-201ENST00000469825 1281 ntBASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 AC097359.3-201ENST00000603982 1210 ntBASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 RAB4B-EGLN2-201ENST00000594136 2554 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 TP73-209ENST00000603362 1668 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 AC226118.1-201ENST00000515213 2146 ntTSL 2 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC20.76■□□□□ 0.91
SHANK3Q9BYB0 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 C1QBPP1-201ENST00000400117 770 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 AGER-214ENST00000538695 487 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 COG4-212ENST00000564653 590 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 RN7SL560P-201ENST00000577943 264 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 MOGS-205ENST00000452063 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 NTMT1-204ENST00000372486 1487 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 ZBTB45P2-201ENST00000452245 1531 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 DMAC2-210ENST00000592922 1622 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 CNN2P8-201ENST00000421872 913 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 AC007969.1-201ENST00000433675 447 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 RPL13AP20-201ENST00000459725 609 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 PPA1-206ENST00000625364 644 ntTSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 UBALD1-205ENST00000590891 2641 ntBASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC20.75■□□□□ 0.91
SHANK3Q9BYB0 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.74■□□□□ 0.91
SHANK3Q9BYB0 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms