Protein–RNA interactions for Protein: Q9BY43

CHMP4A, Charged multivesicular body protein 4a, humanhuman

Predictions only

Length 222 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4AQ9BY43 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 RBM39-205ENST00000397370 612 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 HMGN1P19-201ENST00000436976 333 ntBASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 AL512638.1-201ENST00000457493 794 ntBASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 SERBP1P3-201ENST00000459980 809 ntBASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 FAM208B-201ENST00000328090 8626 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
CHMP4AQ9BY43 AC080080.1-201ENST00000625121 2420 ntBASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 TREML5P-201ENST00000421694 576 ntBASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 IGHV3-42-201ENST00000520410 361 ntBASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 AC005498.2-205ENST00000593218 784 ntBASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 AL133215.2-201ENST00000609242 977 ntBASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 AJ011932.1-201ENST00000621707 465 ntBASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
CHMP4AQ9BY43 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 POTEE-204ENST00000613282 1926 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 POTEI-202ENST00000615053 1926 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 MTND6P24-201ENST00000440466 518 ntBASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 INGX-202ENST00000489074 768 ntBASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 AC093214.1-201ENST00000511688 1107 ntBASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 AL079307.3-201ENST00000556114 283 ntBASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 SPCS2P1-201ENST00000561636 679 ntBASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 FLJ38576-201ENST00000623820 2459 ntBASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.79■□□□□ 0.92
CHMP4AQ9BY43 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC20.78■□□□□ 0.92
CHMP4AQ9BY43 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms