Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 AL135744.1-201ENST00000565098 629 ntBASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 AL031055.1-201ENST00000606362 631 ntBASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 AL513210.1-201ENST00000629608 234 ntBASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 GOLGA6L17P-202ENST00000614358 1398 ntBASIC19.57■□□□□ 0.72
CHMP4CQ96CF2 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 AL513523.2-202ENST00000427283 2040 ntBASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 AC005237.2-201ENST00000434368 219 ntBASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 AC079140.1-201ENST00000508039 487 ntBASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 AC026120.1-201ENST00000611536 926 ntBASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 KIF5C-201ENST00000435030 6931 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 AL512652.2-201ENST00000625156 1716 ntBASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC19.56■□□□□ 0.72
CHMP4CQ96CF2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 CLMAT3-201ENST00000510576 1973 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 GCK-209ENST00000616242 2260 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 FUT5-201ENST00000252675 1916 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 RNU1-129P-201ENST00000384064 167 ntBASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 AL592309.1-201ENST00000443127 649 ntBASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 NDUFB2-202ENST00000460088 420 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 AC109322.1-201ENST00000524499 1264 ntBASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 AC243562.1-201ENST00000560672 389 ntBASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 U1.21-201ENST00000580816 167 ntBASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
CHMP4CQ96CF2 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 TSEN15P1-201ENST00000423257 515 ntBASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 FAM58DP-201ENST00000428076 619 ntBASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 ACTG1P14-201ENST00000446382 1122 ntBASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 THTPA-204ENST00000554970 569 ntTSL 4 BASIC19.54■□□□□ 0.72
CHMP4CQ96CF2 THTPA-206ENST00000556015 535 ntTSL 3 BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms