Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 DNM1P51-201ENST00000558149 522 ntBASIC16.28■□□□□ 0.2
TTC28Q96AY4 AC006435.2-201ENST00000574290 846 ntTSL 5 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 MIR22HG-201ENST00000334146 1383 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 AL133267.1-201ENST00000398220 340 ntBASIC16.28■□□□□ 0.2
TTC28Q96AY4 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 AC145207.1-201ENST00000415556 691 ntTSL 4 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 AL590640.2-201ENST00000457038 527 ntBASIC16.28■□□□□ 0.2
TTC28Q96AY4 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 SCARNA21-201ENST00000517026 139 ntBASIC16.28■□□□□ 0.2
TTC28Q96AY4 AC008687.1-201ENST00000591656 786 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 SERF2-201ENST00000249786 1537 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
TTC28Q96AY4 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
TTC28Q96AY4 FAM168A-204ENST00000450446 1364 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
TTC28Q96AY4 AGPAT5P1-201ENST00000455855 1019 ntBASIC16.27■□□□□ 0.2
TTC28Q96AY4 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.27■□□□□ 0.2
TTC28Q96AY4 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.27■□□□□ 0.2
TTC28Q96AY4 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
TTC28Q96AY4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.27■□□□□ 0.2
TTC28Q96AY4 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
TTC28Q96AY4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 AC019193.1-201ENST00000506678 823 ntBASIC16.27■□□□□ 0.19
TTC28Q96AY4 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 IP6K1-204ENST00000468463 1815 ntTSL 5 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 AC068987.4-201ENST00000562343 2094 ntTSL 5 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
TTC28Q96AY4 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
TTC28Q96AY4 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 SERBP1P2-201ENST00000436888 1164 ntBASIC16.26■□□□□ 0.19
TTC28Q96AY4 AC079112.1-201ENST00000454972 939 ntBASIC16.26■□□□□ 0.19
TTC28Q96AY4 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 EMP2-203ENST00000536829 781 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 EPHX1-202ENST00000366837 1780 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 GNAO1-205ENST00000563661 1351 ntTSL 2 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 KRT18P55-202ENST00000578578 1546 ntBASIC16.26■□□□□ 0.19
TTC28Q96AY4 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC16.26■□□□□ 0.19
TTC28Q96AY4 NIF3L1-205ENST00000409588 1269 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
TTC28Q96AY4 AC108860.2-201ENST00000562760 2183 ntBASIC16.26■□□□□ 0.19
TTC28Q96AY4 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 ARF5-201ENST00000000233 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 CELA3B-201ENST00000337107 897 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 Z97652.1-201ENST00000415176 329 ntTSL 5 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 LINC01278-201ENST00000433061 529 ntTSL 3 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 TXNDC17-202ENST00000570330 459 ntTSL 2 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 LINC01278-206ENST00000610088 554 ntTSL 4 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 PTPN20CP-201ENST00000614090 920 ntBASIC16.25■□□□□ 0.19
TTC28Q96AY4 AC022748.3-201ENST00000621828 275 ntBASIC16.25■□□□□ 0.19
TTC28Q96AY4 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC16.25■□□□□ 0.19
TTC28Q96AY4 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
TTC28Q96AY4 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms