Protein–RNA interactions for Protein: Q5THJ4

VPS13D, Vacuolar protein sorting-associated protein 13D, humanhuman

Predictions only

Length 4,388 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13DQ5THJ4 HLA-A-202ENST00000376806 1854 ntBASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 COMMD5-203ENST00000450361 1573 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 HARS2-202ENST00000448069 1426 ntTSL 2 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 ELK2AP-201ENST00000392510 1007 ntBASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 IGHJ2P-201ENST00000454480 60 ntBASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 KRT8P13-201ENST00000463294 1010 ntBASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 AGER-214ENST00000538695 487 ntTSL 2 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 RETN-203ENST00000629642 400 ntTSL 5 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 HILPDA-201ENST00000257696 1349 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC10.8□□□□□ -0.68
VPS13DQ5THJ4 SOCS2P1-201ENST00000417727 557 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 KRT43P-201ENST00000434019 910 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 CRISPLD2-210ENST00000569090 808 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AC097359.3-201ENST00000603982 1210 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AC006001.1-201ENST00000325130 474 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PTP4A1P2-201ENST00000546033 454 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 DRD5P1-201ENST00000456605 1438 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 REEP1-202ENST00000453231 940 ntTSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 GAPDHP40-201ENST00000505218 1006 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PIGL-212ENST00000581006 554 ntTSL 4 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AL118558.3-201ENST00000607414 1079 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 AC092978.1-202ENST00000637590 1327 ntBASIC10.79□□□□□ -0.68
VPS13DQ5THJ4 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 RPS6KA1-204ENST00000374168 3186 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 AL645608.8-201ENST00000606034 2086 ntBASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 PAM16-215ENST00000577031 548 ntTSL 4 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 MIR4722-201ENST00000578292 60 ntBASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 GPX4-206ENST00000588919 803 ntTSL 2 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
VPS13DQ5THJ4 COX6A2-201ENST00000287490 440 ntAPPRIS P1 TSL 1 (best) BASIC10.78□□□□□ -0.68
Retrieved 100 of 98,524 protein–RNA pairs in 81.5 ms