Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 STARD13-205ENST00000439831 945 ntTSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 FAM185BP-201ENST00000443595 716 ntBASIC19■□□□□ 0.63
SF3A1Q15459 RNA5SP419-201ENST00000515908 135 ntBASIC19■□□□□ 0.63
SF3A1Q15459 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 KRT126P-201ENST00000549467 1181 ntBASIC19■□□□□ 0.63
SF3A1Q15459 UBE2Q2P1-205ENST00000559871 534 ntTSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 PRKN-208ENST00000610470 531 ntTSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 PRKN-209ENST00000612485 225 ntTSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 AC010654.1-201ENST00000615722 808 ntBASIC19■□□□□ 0.63
SF3A1Q15459 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC19■□□□□ 0.63
SF3A1Q15459 HARS-203ENST00000431330 1774 ntTSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 AL162727.3-201ENST00000635661 2787 ntBASIC19■□□□□ 0.63
SF3A1Q15459 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
SF3A1Q15459 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19■□□□□ 0.63
SF3A1Q15459 AC012569.1-201ENST00000591191 1524 ntBASIC19■□□□□ 0.63
SF3A1Q15459 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC19■□□□□ 0.63
SF3A1Q15459 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC18.99■□□□□ 0.63
SF3A1Q15459 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.99■□□□□ 0.63
SF3A1Q15459 CSF3-203ENST00000394148 622 ntTSL 3 BASIC18.99■□□□□ 0.63
SF3A1Q15459 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 AC098831.1-202ENST00000438821 336 ntBASIC18.99■□□□□ 0.63
SF3A1Q15459 TNFSF13-208ENST00000483039 959 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 AC108751.1-201ENST00000490852 363 ntBASIC18.99■□□□□ 0.63
SF3A1Q15459 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC18.99■□□□□ 0.63
SF3A1Q15459 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC18.99■□□□□ 0.63
SF3A1Q15459 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 AC116407.3-201ENST00000623905 1129 ntBASIC18.99■□□□□ 0.63
SF3A1Q15459 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC18.99■□□□□ 0.63
SF3A1Q15459 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.99■□□□□ 0.63
SF3A1Q15459 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC18.98■□□□□ 0.63
SF3A1Q15459 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC18.98■□□□□ 0.63
SF3A1Q15459 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC18.98■□□□□ 0.63
SF3A1Q15459 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC18.98■□□□□ 0.63
SF3A1Q15459 SP100-205ENST00000409824 1802 ntTSL 5 BASIC18.98■□□□□ 0.63
SF3A1Q15459 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC18.98■□□□□ 0.63
SF3A1Q15459 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC18.98■□□□□ 0.63
SF3A1Q15459 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 MAP4K5-201ENST00000013125 4354 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 AL365203.3-201ENST00000609742 2057 ntBASIC18.98■□□□□ 0.63
SF3A1Q15459 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.98■□□□□ 0.63
SF3A1Q15459 POU5F1P6-201ENST00000466990 990 ntBASIC18.98■□□□□ 0.63
SF3A1Q15459 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC18.98■□□□□ 0.63
SF3A1Q15459 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC18.98■□□□□ 0.63
SF3A1Q15459 GPX4-212ENST00000616066 924 ntAPPRIS ALT1 TSL 5 BASIC18.98■□□□□ 0.63
SF3A1Q15459 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
SF3A1Q15459 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
SF3A1Q15459 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC18.98■□□□□ 0.63
SF3A1Q15459 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms