Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC12.38□□□□□ -0.43
FOXA3P55318 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC12.38□□□□□ -0.43
FOXA3P55318 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 TSPY15P-201ENST00000457163 923 ntBASIC12.38□□□□□ -0.43
FOXA3P55318 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 DHDH-203ENST00000522614 776 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA3P55318 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA3P55318 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 NAPSB-206ENST00000562112 1266 ntBASIC12.38□□□□□ -0.43
FOXA3P55318 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC12.38□□□□□ -0.43
FOXA3P55318 NDUFV2-AS1-201ENST00000582375 770 ntTSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC12.38□□□□□ -0.43
FOXA3P55318 AL353801.3-201ENST00000609898 542 ntBASIC12.38□□□□□ -0.43
FOXA3P55318 AL031432.5-201ENST00000641059 760 ntBASIC12.38□□□□□ -0.43
FOXA3P55318 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA3P55318 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 PDE7A-203ENST00000401827 3673 ntAPPRIS ALT1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 MINDY2-203ENST00000559228 9238 ntAPPRIS P3 TSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 AC106881.1-201ENST00000605849 3329 ntBASIC12.38□□□□□ -0.43
FOXA3P55318 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 AP000253.1-201ENST00000449339 2233 ntTSL 3 BASIC12.38□□□□□ -0.43
FOXA3P55318 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
FOXA3P55318 SCRN2-202ENST00000407215 1779 ntTSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC12.38□□□□□ -0.43
FOXA3P55318 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 CCNDBP1-201ENST00000300213 3660 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
FOXA3P55318 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC12.37□□□□□ -0.43
FOXA3P55318 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 CEP164-201ENST00000278935 5630 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 AC069224.1-201ENST00000566372 1715 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 MLLT6-211ENST00000621332 7578 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 NWD2-201ENST00000309447 8325 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
FOXA3P55318 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 AC023908.3-201ENST00000564211 3047 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 PTPRA-201ENST00000216877 3725 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC12.37□□□□□ -0.43
FOXA3P55318 CD70-202ENST00000423145 881 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 AC009487.1-202ENST00000437683 402 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC12.37□□□□□ -0.43
FOXA3P55318 GXYLT1P3-201ENST00000453058 1193 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC12.37□□□□□ -0.43
FOXA3P55318 AC092597.1-201ENST00000487352 616 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC12.37□□□□□ -0.43
FOXA3P55318 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 AL390719.2-201ENST00000606993 987 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 SPEG-225ENST00000617028 815 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA3P55318 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA3P55318 PAPSS2-201ENST00000361175 3949 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 LARGE1-201ENST00000354992 4409 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 AC006486.2-201ENST00000624246 2199 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 AC026748.1-201ENST00000624349 3251 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 LRIG3-201ENST00000320743 4070 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
FOXA3P55318 ELP1-201ENST00000374647 5905 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC12.37□□□□□ -0.43
FOXA3P55318 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
FOXA3P55318 LINC01144-201ENST00000626198 1710 ntBASIC12.37□□□□□ -0.43
FOXA3P55318 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC12.37□□□□□ -0.43
FOXA3P55318 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC12.36□□□□□ -0.43
FOXA3P55318 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC12.36□□□□□ -0.43
FOXA3P55318 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
FOXA3P55318 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms