Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC17.57■□□□□ 0.4
VCPP55072 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
VCPP55072 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC17.57■□□□□ 0.4
VCPP55072 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC17.57■□□□□ 0.4
VCPP55072 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
VCPP55072 AC027796.3-201ENST00000572919 4753 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 ADCY1-202ENST00000432715 1693 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC17.56■□□□□ 0.4
VCPP55072 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 AC243562.1-201ENST00000560672 389 ntBASIC17.56■□□□□ 0.4
VCPP55072 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC17.56■□□□□ 0.4
VCPP55072 AL158211.3-201ENST00000607385 239 ntBASIC17.56■□□□□ 0.4
VCPP55072 BSG-214ENST00000614867 960 ntTSL 3 BASIC17.56■□□□□ 0.4
VCPP55072 RAB34-224ENST00000636513 888 ntTSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.56■□□□□ 0.4
VCPP55072 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
VCPP55072 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
VCPP55072 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
VCPP55072 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 AL021920.2-201ENST00000624828 1351 ntBASIC17.55■□□□□ 0.4
VCPP55072 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 PCDH8P1-201ENST00000428983 2773 ntBASIC17.55■□□□□ 0.4
VCPP55072 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC17.55■□□□□ 0.4
VCPP55072 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC17.55■□□□□ 0.4
VCPP55072 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC17.55■□□□□ 0.4
VCPP55072 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC17.55■□□□□ 0.4
VCPP55072 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.55■□□□□ 0.4
VCPP55072 AC097493.3-201ENST00000509725 367 ntBASIC17.55■□□□□ 0.4
VCPP55072 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.55■□□□□ 0.4
VCPP55072 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC17.55■□□□□ 0.4
VCPP55072 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 IFT20-216ENST00000588477 774 ntTSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 AC046158.3-201ENST00000624947 2558 ntBASIC17.55■□□□□ 0.4
VCPP55072 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
VCPP55072 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
VCPP55072 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
VCPP55072 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC17.55■□□□□ 0.4
VCPP55072 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
VCPP55072 AMT-206ENST00000458307 1860 ntTSL 2 BASIC17.54■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 60.3 ms