Protein–RNA interactions for Protein: P53675

CLTCL1, Clathrin heavy chain 2, humanhuman

Predictions only

Length 1,640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1P53675 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CLTCL1P53675 AP001282.1-201ENST00000531301 1499 ntBASIC23.05■■□□□ 1.28
CLTCL1P53675 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
CLTCL1P53675 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CLTCL1P53675 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
CLTCL1P53675 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC23.04■■□□□ 1.28
CLTCL1P53675 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC23.04■■□□□ 1.28
CLTCL1P53675 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC23.04■■□□□ 1.28
CLTCL1P53675 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC23.04■■□□□ 1.28
CLTCL1P53675 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 COX11-210ENST00000639671 696 ntBASIC23.04■■□□□ 1.28
CLTCL1P53675 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 F3-202ENST00000370207 1879 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CLTCL1P53675 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 VILL-207ENST00000465644 1857 ntTSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC23.04■■□□□ 1.28
CLTCL1P53675 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC23.04■■□□□ 1.28
CLTCL1P53675 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 IL32-202ENST00000325568 1105 ntAPPRIS P4 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 IL32-203ENST00000382213 880 ntAPPRIS ALT2 TSL 3 BASIC23.04■■□□□ 1.28
CLTCL1P53675 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC23.04■■□□□ 1.28
CLTCL1P53675 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC23.04■■□□□ 1.28
CLTCL1P53675 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC23.04■■□□□ 1.28
CLTCL1P53675 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
CLTCL1P53675 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC23.03■■□□□ 1.28
CLTCL1P53675 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CLTCL1P53675 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CLTCL1P53675 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC23.03■■□□□ 1.28
CLTCL1P53675 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CLTCL1P53675 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC23.03■■□□□ 1.28
CLTCL1P53675 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC23.03■■□□□ 1.28
CLTCL1P53675 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC23.03■■□□□ 1.28
CLTCL1P53675 TSFM-201ENST00000323833 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
CLTCL1P53675 BNIP3P42-201ENST00000454982 569 ntBASIC23.03■■□□□ 1.28
CLTCL1P53675 FAM86LP-201ENST00000478302 853 ntBASIC23.03■■□□□ 1.28
CLTCL1P53675 TIMM17BP1-201ENST00000545713 516 ntBASIC23.03■■□□□ 1.28
CLTCL1P53675 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC23.03■■□□□ 1.28
CLTCL1P53675 BNIP3P29-201ENST00000598302 571 ntBASIC23.03■■□□□ 1.28
CLTCL1P53675 AC097359.3-201ENST00000603982 1210 ntBASIC23.03■■□□□ 1.28
CLTCL1P53675 AC011447.5-201ENST00000616168 564 ntBASIC23.03■■□□□ 1.28
CLTCL1P53675 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC23.03■■□□□ 1.28
CLTCL1P53675 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
CLTCL1P53675 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
CLTCL1P53675 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC23.03■■□□□ 1.28
CLTCL1P53675 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
CLTCL1P53675 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.28
CLTCL1P53675 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CLTCL1P53675 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CLTCL1P53675 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC23.02■■□□□ 1.28
CLTCL1P53675 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC23.02■■□□□ 1.28
CLTCL1P53675 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC23.02■■□□□ 1.28
CLTCL1P53675 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC23.02■■□□□ 1.28
CLTCL1P53675 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC23.02■■□□□ 1.28
CLTCL1P53675 ABBA01031660.1-201ENST00000635219 756 ntBASIC23.02■■□□□ 1.28
CLTCL1P53675 DIABLO-203ENST00000353548 1345 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CLTCL1P53675 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC23.02■■□□□ 1.28
CLTCL1P53675 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC23.02■■□□□ 1.28
CLTCL1P53675 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC23.02■■□□□ 1.28
CLTCL1P53675 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
CLTCL1P53675 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
CLTCL1P53675 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
CLTCL1P53675 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC23.02■■□□□ 1.28
CLTCL1P53675 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC23.02■■□□□ 1.27
CLTCL1P53675 FLJ38576-201ENST00000623820 2459 ntBASIC23.01■■□□□ 1.27
CLTCL1P53675 CSF2-201ENST00000296871 787 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC23.01■■□□□ 1.27
CLTCL1P53675 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 MFF-223ENST00000524634 647 ntTSL 2 BASIC23.01■■□□□ 1.27
CLTCL1P53675 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CLTCL1P53675 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC23.01■■□□□ 1.27
CLTCL1P53675 GNRHR2-203ENST00000581100 1187 ntBASIC23.01■■□□□ 1.27
CLTCL1P53675 AC233724.13-201ENST00000598383 410 ntBASIC23.01■■□□□ 1.27
CLTCL1P53675 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC23.01■■□□□ 1.27
CLTCL1P53675 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC23.01■■□□□ 1.27
CLTCL1P53675 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC23.01■■□□□ 1.27
CLTCL1P53675 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC23.01■■□□□ 1.27
CLTCL1P53675 ATP6V0E2-212ENST00000611515 2565 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 PDIA3P1-201ENST00000471856 1510 ntBASIC23.01■■□□□ 1.27
CLTCL1P53675 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
CLTCL1P53675 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC23■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms