Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CTCFP49711 BCL2-203ENST00000589955 5011 ntBASIC18.87■□□□□ 0.61
CTCFP49711 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC18.87■□□□□ 0.61
CTCFP49711 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 AC091046.1-201ENST00000331871 207 ntBASIC18.87■□□□□ 0.61
CTCFP49711 ETV7-201ENST00000339796 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC18.87■□□□□ 0.61
CTCFP49711 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 DLGAP4-AS1-202ENST00000433238 593 ntTSL 3 BASIC18.87■□□□□ 0.61
CTCFP49711 PTPA-217ENST00000434095 870 ntTSL 2 BASIC18.87■□□□□ 0.61
CTCFP49711 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 SLC9A3P2-201ENST00000447821 2021 ntBASIC18.87■□□□□ 0.61
CTCFP49711 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 BX284668.4-201ENST00000453917 508 ntBASIC18.87■□□□□ 0.61
CTCFP49711 AC091804.1-201ENST00000486888 567 ntBASIC18.87■□□□□ 0.61
CTCFP49711 HNRNPA1P13-201ENST00000510646 963 ntBASIC18.87■□□□□ 0.61
CTCFP49711 LZTS1-203ENST00000522290 1614 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 AC068587.3-201ENST00000526613 355 ntBASIC18.87■□□□□ 0.61
CTCFP49711 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC18.87■□□□□ 0.61
CTCFP49711 AC110285.1-205ENST00000572301 559 ntTSL 3 BASIC18.87■□□□□ 0.61
CTCFP49711 MIR3619-201ENST00000579667 83 ntBASIC18.87■□□□□ 0.61
CTCFP49711 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 TP73-213ENST00000604479 1623 ntTSL 5 BASIC18.87■□□□□ 0.61
CTCFP49711 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC18.87■□□□□ 0.61
CTCFP49711 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC18.87■□□□□ 0.61
CTCFP49711 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 AC134043.2-201ENST00000624206 2238 ntBASIC18.87■□□□□ 0.61
CTCFP49711 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CTCFP49711 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTCFP49711 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CTCFP49711 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC18.86■□□□□ 0.61
CTCFP49711 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.86■□□□□ 0.61
CTCFP49711 RPS3-201ENST00000278572 907 ntTSL 3 BASIC18.86■□□□□ 0.61
CTCFP49711 NDUFB8-201ENST00000299166 671 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CTCFP49711 SPDYE17-201ENST00000412399 783 ntBASIC18.86■□□□□ 0.61
CTCFP49711 MAGEA5-201ENST00000446757 942 ntBASIC18.86■□□□□ 0.61
CTCFP49711 REEP1-202ENST00000453231 940 ntTSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 DMKN-216ENST00000458071 510 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
CTCFP49711 AC008267.1-201ENST00000474858 1069 ntBASIC18.86■□□□□ 0.61
CTCFP49711 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CTCFP49711 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC18.86■□□□□ 0.61
CTCFP49711 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 QPRT-203ENST00000562473 579 ntTSL 3 BASIC18.86■□□□□ 0.61
CTCFP49711 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC18.86■□□□□ 0.61
CTCFP49711 NAA38-207ENST00000576861 556 ntTSL 3 BASIC18.86■□□□□ 0.61
CTCFP49711 AC025048.3-201ENST00000590609 569 ntBASIC18.86■□□□□ 0.61
CTCFP49711 GEMIN7-204ENST00000591747 576 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CTCFP49711 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
CTCFP49711 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 RHOB-201ENST00000272233 2372 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CTCFP49711 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 SYNM-204ENST00000594047 6407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CTCFP49711 GOLGA2P9-201ENST00000596977 1937 ntBASIC18.86■□□□□ 0.61
CTCFP49711 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 AC131009.4-201ENST00000624048 1740 ntBASIC18.86■□□□□ 0.61
CTCFP49711 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTCFP49711 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CTCFP49711 BNIP2-213ENST00000612191 2515 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC18.85■□□□□ 0.61
CTCFP49711 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC18.85■□□□□ 0.61
CTCFP49711 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CTCFP49711 TNRC18P3-201ENST00000441896 2691 ntBASIC18.85■□□□□ 0.61
CTCFP49711 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.85■□□□□ 0.61
CTCFP49711 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CTCFP49711 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTCFP49711 ARMC12-203ENST00000373869 1111 ntTSL 2 BASIC18.85■□□□□ 0.61
CTCFP49711 TPO-206ENST00000382269 1155 ntTSL 5 BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms