Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 UBALD1-205ENST00000590891 2641 ntBASIC12.7□□□□□ -0.38
HOXD3P31249 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC12.7□□□□□ -0.38
HOXD3P31249 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 SLC22A3-201ENST00000275300 3348 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 AC002472.2-201ENST00000442739 958 ntBASIC12.7□□□□□ -0.38
HOXD3P31249 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 AL512638.1-201ENST00000457493 794 ntBASIC12.7□□□□□ -0.38
HOXD3P31249 OARD1-208ENST00000469104 704 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 SLC25A39P2-201ENST00000537614 270 ntBASIC12.7□□□□□ -0.38
HOXD3P31249 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 INO80E-210ENST00000567705 880 ntTSL 3 BASIC12.7□□□□□ -0.38
HOXD3P31249 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC12.7□□□□□ -0.38
HOXD3P31249 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC12.7□□□□□ -0.38
HOXD3P31249 AC020765.3-201ENST00000613051 740 ntBASIC12.7□□□□□ -0.38
HOXD3P31249 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXD3P31249 RAB34-224ENST00000636513 888 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXD3P31249 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 GPAA1P2-202ENST00000606848 1787 ntBASIC12.7□□□□□ -0.38
HOXD3P31249 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXD3P31249 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.7□□□□□ -0.38
HOXD3P31249 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
HOXD3P31249 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC12.7□□□□□ -0.38
HOXD3P31249 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 OR4D1-202ENST00000641449 4925 ntAPPRIS P1 BASIC12.69□□□□□ -0.38
HOXD3P31249 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 EDF1-203ENST00000371649 790 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 WRB-204ENST00000398753 699 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXD3P31249 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 GSAP-205ENST00000430584 600 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 SPDYE14P-201ENST00000442619 822 ntBASIC12.69□□□□□ -0.38
HOXD3P31249 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC12.69□□□□□ -0.38
HOXD3P31249 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXD3P31249 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC12.69□□□□□ -0.38
HOXD3P31249 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXD3P31249 AL512356.2-201ENST00000546955 174 ntBASIC12.69□□□□□ -0.38
HOXD3P31249 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXD3P31249 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXD3P31249 KRT8P23-201ENST00000560090 1207 ntBASIC12.69□□□□□ -0.38
HOXD3P31249 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 RN7SL204P-201ENST00000582831 262 ntBASIC12.69□□□□□ -0.38
HOXD3P31249 AC008267.7-201ENST00000624570 1194 ntBASIC12.69□□□□□ -0.38
HOXD3P31249 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC12.69□□□□□ -0.38
HOXD3P31249 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.69□□□□□ -0.38
HOXD3P31249 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC12.69□□□□□ -0.38
HOXD3P31249 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
HOXD3P31249 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC12.68□□□□□ -0.38
HOXD3P31249 TLN1-201ENST00000314888 8823 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 PPOX-202ENST00000367999 1740 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
HOXD3P31249 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC12.68□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms